Halobacterium bonnevillei (LMG 31022, ATCC TSD-126, JCM 32472)

Name: Halobacterium bonnevillei (LMG 31022, ATCC TSD-126, JCM 32472)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164269

Type strain

Culture col. no. LMG 31022 ATCC TSD-126 JCM 32472

NCBI tax ID(s) 2692200

Special Collections JCM

History JCM <-- G. M. King; Louisiana State Univ., USA; PCN9.

Links

Halobacterium bonnevillei JCM 32472 is an archaeon that was isolated from Salt crust of the Bonneville Salt Flats.

genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 10601

LMG 29863,ATCC TSD-126

@ref 20215

Last LPSN update 2026-05-29 08:45:22

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Halobacteriaceae

Genus Halobacterium

Species Halobacterium bonnevillei

Full scientific name Halobacterium bonnevillei Myers and King 2020

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	91.745

Spore formation

@ref	Spore formation	Confidence
125439		96.138

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Salt crust of the Bonneville Salt Flats	Utah	USA	USA	North America

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM983155v1 assembly for Halobacterium bonnevillei PCN9	contig	GCA_009831555	2692200.3	8066016507	2692200	0

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Halobacterium bonnevillei strain PCN9 16S ribosomal RNA gene, partial sequence	MK262901	1340		2243

GC content

@ref	GC-content (mol%)	Method
67770	66.75	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM983155v1 assembly for Halobacterium bonnevillei PCN9
NCBI: GCA_009831555

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.75	no
125439	motility	BacteriaNetⓘ	yes	42.31	no
125439	gram_stain	BacteriaNetⓘ	positive	59.64	no
125439	spore_formation	BacteriaNetⓘ	no	96.14	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Halobacterium bonnevillei PCN9
NCBI: GCA_009831555.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	74.78	no
125438	anaerobic	anaerobicⓘ	no	80.50	no
125438	aerobic	aerobicⓘ	yes	79.68	no
125438	spore-forming	spore-formingⓘ	no	86.46	no
125438	thermophilic	thermophileⓘ	no	77.86	no
125438	flagellated	motile2+ⓘ	no	88.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halobacterium bonnevillei sp. nov., Halobaculum saliterrae sp. nov. and Halovenus carboxidivorans sp. nov., three novel carbon monoxide-oxidizing Halobacteria from saline crusts and soils.	Myers MR, King GM	Int J Syst Evol Microbiol	10.1099/ijsem.0.004282	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Halobacterium bonnevillei (LMG 31022, ATCC TSD-126, JCM 32472)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_009831555

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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