Yinghuangia seranimata (DSM 41883, CCTCC AA 206006, YIM 45720)

Name: Yinghuangia seranimata (DSM 41883, CCTCC AA 206006, YIM 45720)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16426

Type strain

Culture col. no. DSM 41883 CCTCC AA 206006 YIM 45720

NCBI tax ID(s) 408067

Special Collections DSMZ Wink compendium

History DSMZ <- S.-K. Tang; YIM 45720 <- Y.-X. Wang

Links

Yinghuangia seranimata DSM 41883 is a bacterium that builds an aerial mycelium and was isolated from soil from the rhizophere of Cephalotaxus fortunei.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 294142

BCRC 16903,DSM 41883

@ref 20215

Last LPSN update 2026-05-29 08:28:46

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Yinghuangia

Species Yinghuangia seranimata

Full scientific name Yinghuangia seranimata (Wang et al. 2012) Komaki and Tamura 2019

Synonyms (2)

Streptomyces serianimatus
Streptomyces seranimatus

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	99.92
125439		94.887

Colony morphology

@ref	Colony color	Medium used
69304	Grey white (9002)	ISP 3
69304	Ivory (1014)	suter with tyrosine
69304	Light ivory (1015)	suter without tyrosine
69304	Oyster white (1013)	ISP 5
69304	Sand yellow (1002)	ISP 2
69304	Sand yellow (1002)	ISP 6
69304	Sand yellow (1002), light ivory (1015)	ISP 4
69304	Traffic white (9016)	ISP 7

Multicellular morphology

@ref	Complex name	Complex color	Medium name
69304	Aerial mycelium	Platinum grey (7036)	ISP 2
69304	Aerial mycelium		ISP 3
69304	Aerial mycelium		ISP 4
69304	Aerial mycelium		ISP 5
69304	Aerial mycelium		ISP 6
69304	Aerial mycelium		ISP 7
69304	Aerial mycelium		suter with tyrosine
69304	Aerial mycelium		suter without tyrosine

Pigmentation

@ref	Production	Name
69304		melanin pigment
69304		soluble pigment

Multimedia

@ref:	10646
multimedia content:	DSM_41883.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_41883.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	69304
multimedia content:	DSM_41883_image3.jpeg
multimedia.multimedia content:	DSM_41883_image3.jpeg
caption:	Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69304
multimedia content:	DSM_41883_image4.jpeg
multimedia.multimedia content:	DSM_41883_image4.jpeg
caption:	Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
10646	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
10646	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.605

Spore formation

@ref	Spore formation	Confidence
125439		97.344

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69304	NaCl	positive	growth	0-5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69304	22599 ChEBI	arabinose	-	growth
69304	62968 ChEBI	cellulose	-	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
69304	28757 ChEBI	fructose	+	growth
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
69304	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69304	37684 ChEBI	mannose	-	growth
69304	17268 ChEBI	myo-inositol	-	growth
68379	17632 ChEBI	nitrate	+	reduction	from API Coryne
69304	16634 ChEBI	raffinose	-	growth
69304	26546 ChEBI	rhamnose	+	growth
69304	17992 ChEBI	sucrose	+/-	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
69304	18222 ChEBI	xylose	+	growth

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68379	beta-galactosidase	+	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne
68382	valine arylamidase	+		from API zym

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69304	+	-	-	+	-	+	+	-	+	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69304	not determinedn.d.	+	+/-	+/-	-	+	+	+/-	-	-	+	+	-	+	-	+	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Shrub (Scrub)
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
10646	soil from the rhizophere of Cephalotaxus fortunei	Cephalotaxus fortunei	Yunnan Province, Xishuangbanna	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ997046 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	2
Soil Samples	27
Animal Samples	0
Plant Samples	18
Total Samples	47

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10646	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM2995328v1 assembly for Yinghuangia seranimata CCTCC AA 206006	contig	GCA_029953285	408067.3	8046713015	408067	52.39

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
10646	Streptomyces seranimatus strain YIM 45720 16S ribosomal RNA gene, partial sequence	DQ997046	1410		408067

GC content

@ref	GC-content (mol%)	Method
10646	70	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2995328v1 assembly for Yinghuangia seranimata CCTCC AA 206006
NCBI: GCA_029953285

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	99.92	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.61	no
125439	motility	BacteriaNetⓘ	no	94.89	no
125439	spore_formation	BacteriaNetⓘ	yes	97.34	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Transfer of Streptomyces catbensis Sakiyama et al. 2014 and Streptomyces seranimatus Wang et al. 2012 to Yinghuangia catbensis comb. nov. and Yinghuangia seranimata comb. nov.	Komaki H, Tamura T	Int J Syst Evol Microbiol	10.1099/ijsem.0.003458	2019

References

#10646	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41883
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69304	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Yinghuangia seranimata (DSM 41883, CCTCC AA 206006, YIM 45720)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_029953285

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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