Name: Streptomyces seranimatus DSM 41883
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16426

Type strain:

Species: Streptomyces seranimatus

Culture col. no.: DSM 41883, CCTCC AA 206006, YIM 45720

Strain history: <- S.-K. Tang; YIM 45720 <- Y.-X. Wang

NCBI tax ID(s): 408067 (species)

SI-ID 294142

DSM 41883

Section

Streptomyces seranimatus DSM 41883 is a mesophilic bacterium that builds an aerial mycelium and was isolated from soil from the rhizophere of Cephalotaxus fortunei.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	Streptomyces seranimatus
	Full Scientific Name (LPSN)	Streptomyces seranimatus corrig. Wang et al. 2012

	Synonym	Streptomyces serianimatus
	Synonym	**Yinghuangia seranimata**

Information on morphological and physiological properties Morphology

[Ref.: #69304]	Colony color	Grey white (9002)
[Ref.: #69304]	Cultivation medium used	ISP 3

[Ref.: #69304]	Colony color	Ivory (1014)
[Ref.: #69304]	Cultivation medium used	suter with tyrosine

[Ref.: #69304]	Colony color	Light ivory (1015)
[Ref.: #69304]	Cultivation medium used	suter without tyrosine

[Ref.: #69304]	Colony color	Oyster white (1013)
[Ref.: #69304]	Cultivation medium used	ISP 5

[Ref.: #69304]	Colony color	Sand yellow (1002)
[Ref.: #69304]	Cultivation medium used	ISP 2

[Ref.: #69304]	Colony color	Sand yellow (1002)
[Ref.: #69304]	Cultivation medium used	ISP 6

[Ref.: #69304]	Colony color	Sand yellow (1002), light ivory (1015)
[Ref.: #69304]	Cultivation medium used	ISP 4

[Ref.: #69304]	Colony color	Traffic white (9016)
[Ref.: #69304]	Cultivation medium used	ISP 7

[Ref.: #69304]	Pigment production	no
[Ref.: #69304]	Pigment name	Melanin
[Ref.: #69304]	Pigment production	no
[Ref.: #69304]	Pigment name	soluble pigment

[Ref.: #69304]	Multicellular complex forming ability	yes
[Ref.: #69304]	Multicellular complex name	Aerial mycelium
[Ref.: #69304]	Multicellular complex color	Platinum grey (7036)
[Ref.: #69304]	Medium Name (multicellularity)	ISP 2

[Ref.: #69304]	Multicellular complex forming ability	no
[Ref.: #69304]	Multicellular complex name	Aerial mycelium
[Ref.: #69304]	Medium Name (multicellularity)	ISP 3

[Ref.: #69304]	Multicellular complex forming ability	no
[Ref.: #69304]	Multicellular complex name	Aerial mycelium
[Ref.: #69304]	Medium Name (multicellularity)	ISP 4

[Ref.: #69304]	Multicellular complex forming ability	no
[Ref.: #69304]	Multicellular complex name	Aerial mycelium
[Ref.: #69304]	Medium Name (multicellularity)	ISP 5

[Ref.: #69304]	Multicellular complex forming ability	no
[Ref.: #69304]	Multicellular complex name	Aerial mycelium
[Ref.: #69304]	Medium Name (multicellularity)	ISP 6

[Ref.: #69304]	Multicellular complex forming ability	no
[Ref.: #69304]	Multicellular complex name	Aerial mycelium
[Ref.: #69304]	Medium Name (multicellularity)	ISP 7

[Ref.: #69304]	Multicellular complex forming ability	no
[Ref.: #69304]	Multicellular complex name	Aerial mycelium
[Ref.: #69304]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69304]	Multicellular complex forming ability	no
[Ref.: #69304]	Multicellular complex name	Aerial mycelium
[Ref.: #69304]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #10646]

Caption:

Medium 65 28°C

[Ref.: #10646]

Intellectual property rights:

[Ref.: #69304]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69304]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69304]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69304]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10646]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10646]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #10646]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #10646]			growth	28 °C

[Ref.: #10646]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69304]		NaCl		growth	0-5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69304]	arabinose ChEBI	-	growth
[Ref.: #69304]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69304]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69304]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69304]	inositol ChEBI	-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69304]	mannose ChEBI	-	growth
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #69304]	raffinose ChEBI	-	growth
[Ref.: #69304]	rhamnose ChEBI	+	growth
[Ref.: #69304]	sucrose ChEBI	+/-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69304]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69304]	3797	+	-	-	+	-	+	+	-	+	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69304]	5981	not determinedn.d.	+	+/-	+/-	-	+	+	+/-	-	-	+	+	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10646]	Sample type/isolated from	soil from the rhizophere of Cephalotaxus fortunei
[Ref.: #10646]	Host species	Cephalotaxus fortunei
[Ref.: #10646]	Geographic location (country and/or sea, region)	Yunnan Province, Xishuangbanna
[Ref.: #10646]	Country	China
[Ref.: #10646]	Country ISO 3 Code	CHN
[Ref.: #10646]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Shrub (Scrub)
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ997046 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	2
Soil Samples	27
Animal Samples
Plant Samples	18
Total Samples	47

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10646]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #10646]	Streptomyces seranimatus strain YIM 45720 16S ribosomal RNA gene, partial sequence	DQ997046	1410	ENA	408067 tax ID

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GC-content

70 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

DSM 41883, CCTCC AA 206006, YIM 45720

[Ref.: #85467]

SI-ID 294142

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Transfer of Streptomyces catbensis Sakiyama et al. 2014 and Streptomyces seranimatus Wang et al. 2012 to Yinghuangia catbensis comb. nov. and Yinghuangia seranimata comb. nov.	Komaki H, Tamura T	Int J Syst Evol Microbiol	10.1099/ijsem.0.003458	2019	*

References

#10646

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41883

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69304

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#85467

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID294142.1 )

* These data were automatically processed and therefore are not curated

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