Name: Glaciimonas soli GS1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164247

Type strain:

Species: Glaciimonas soli

Strain Designation: GS1

Culture col. no.: JCM 32375, BCRC 81091

Strain history: W. Y. Shieh; Inst. of Oceanogr., Natl. Taiwan Univ., Taiwan; GS1.

NCBI tax ID(s): 2590999 (species)

Section

Glaciimonas soli GS1 is an aerobe, psychrophilic, Gram-negative bacterium that forms circular colonies and was isolated from Forest soil on the West Peak of Mt. Yushan.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Glaciimonas*
	Species	**Glaciimonas soli**
	Full Scientific Name (LPSN)	Glaciimonas soli Huang et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #68105]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.975

[Ref.: #68105]	Cell length	2.0-2.7 µm

[Ref.: #68105]	Cell width	0.7-0.8 µm

[Ref.: #68105]	Cell shape	rod-shaped

[Ref.: #68105]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.817

[Ref.: #68105]	Flagellum arrangement	monotrichous

[Ref.: #68105]	Colony size	0.5-1.5 mm
[Ref.: #68105]	Colony color	off-white
[Ref.: #68105]	Colony shape	circular
[Ref.: #68105]	Incubation period	4-7 days
[Ref.: #68105]	Cultivation medium used	PY agar

Information on culture and growth conditions Culture and growth conditions

	Kind of temperature		Temperature
[Ref.: #67770]		growth	15 °C
[Ref.: #68105]		growth	4-25 °C
[Ref.: #68105]		optimum	10-15 °C
[Ref.: #68105]	no	growth	30-35 °C

[Ref.: #67770]	Temperature range	psychrophilic
[Ref.: #68105]	Temperature range	psychrophilic
[Ref.: #68105]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68105]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68105]

Oxygen tolerance

aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #68105]	NaCl		growth	0.0-2.0	%
[Ref.: #68105]	NaCl		optimum	0.0-0.5	%
[Ref.: #68105]	NaCl	no	growth	2.5-3.0	%

[Ref.: #67770]	Observation	quinones: Q-8
[Ref.: #68105]	Observation	grown in broth cultures are mostly non-motile and non-flagellated, whereas motile cells with monotrichous, subpolar flagella are also present
[Ref.: #68105]	Observation	The major and only respiratory quinone is ubiquinone 8 (UQ-8)
[Ref.: #68105]	Observation	The polar lipids are dominated by phosphatidylethanolamine, diphosphatidylglycerol and dimethylaminoethanol, while three unidentified phospholipids are present in minor proportions

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68105]	agar ChEBI	-	hydrolysis
[Ref.: #68105]	casein	-	hydrolysis
[Ref.: #68105]	D-glucose ChEBI	-	anaerobic growth
[Ref.: #68105]	D-glucose ChEBI	+	assimilation
[Ref.: #68105]	gelatin ChEBI	+/-	hydrolysis
[Ref.: #68105]	N-acetyl-D-glucosamine ChEBI	+	assimilation
[Ref.: #68105]	nitrate ChEBI	+	anaerobic growth
[Ref.: #68105]	nitrate ChEBI	+	electron acceptor
[Ref.: #68105]	sodium citrate ChEBI	+	assimilation
[Ref.: #68105]	starch ChEBI	-	hydrolysis
[Ref.: #68105]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68105]	acid phosphatase	+	3.1.3.2
[Ref.: #68105]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68105]	alpha-chymotrypsin	+/-	3.4.21.1
[Ref.: #68105]	catalase	+	1.11.1.6
[Ref.: #68105]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68105]	esterase (C 4)	+/-
[Ref.: #68105]	esterase Lipase (C 8)	+/-
[Ref.: #68105]	leucine arylamidase	+	3.4.11.1
[Ref.: #68105]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68105]	valine arylamidase	+/-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Forest soil on the West Peak of Mt. Yushan
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yushan National Park
[Ref.: #67770]	Country	Taiwan
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia

[Ref.: #68105]	Sample type/isolated from	forest soil, elevation of approximately 3500 m
[Ref.: #68105]	Geographic location (country and/or sea, region)	West Peak of Mt. Yushan, Yushan National Park
[Ref.: #68105]	Country	Taiwan
[Ref.: #68105]	Country ISO 3 Code	TWN
[Ref.: #68105]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Glaciimonas sp. GS1 16S ribosomal RNA gene, partial sequence	MN100447	1460	ENA	2590999 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Glaciimonas soli GS1	GCA_009497155	scaffold	GenBank	2590999 tax ID
[Ref.: #66792]	Glaciimonas sp. GS1	2590999.3	wgs	PATRIC	2590999 tax ID	*

[Ref.: #67770]

GC-content

49.2 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Glaciimonas soli GS1 NCBI: GCA_009497155.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Glaciimonas sp. GS1 PATRIC: 2590999.3
[Ref.: #69480]	motile	yes	89.524	yes
[Ref.: #69480]	gram-positive	no	98.268	yes
[Ref.: #69480]	anaerobic	no	99.21	yes
[Ref.: #69480]	aerobic	yes	93.907	yes
[Ref.: #69480]	halophile	no	95.85	yes
[Ref.: #69480]	spore-forming	no	93.984	no
[Ref.: #69480]	glucose-util	yes	79.061	no
[Ref.: #69480]	flagellated	yes	65.678	yes
[Ref.: #69480]	thermophile	no	99.26	yes
[Ref.: #69480]	glucose-ferment	no	88.919	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 32375, BCRC 81091

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Glaciimonas soli sp. nov., a soil bacterium isolated from the forest of a high elevation mountain.	Huang WS, Wang LT, Sun JN, Chen JS, Huang SP, Lin ST, Huang L, Shieh WY	Antonie Van Leeuwenhoek	10.1007/s10482-020-01428-z	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68105

Wei-Sheng Huang, Li-Ting Wang, Jun-Ning Sun, Jwo-Sheng Chen, Ssu-Po Huang, Shih-Ting Lin, Lina Huang, Wung Yang Shieh: Glaciimonas soli sp. nov., a soil bacterium isolated from the forest of a high elevation mountain. Antonie Van Leeuwenhoek 113: 1213 - 1223 2020 ( DOI 10.1007/s10482-020-01428-z )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Glaciimonas soli GS1

Glaciimonas sp. GS1

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