Roseithermus sacchariphilus (KCCM 43267, JCM 32374, MEBiC 09517)

Name: Roseithermus sacchariphilus (KCCM 43267, JCM 32374, MEBiC 09517)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164246

Type strain

Culture col. no. KCCM 43267 JCM 32374 MEBiC 09517

NCBI tax ID(s) 2893045

Special Collections JCM Literature strains

History JCM <-- K. K. Kwon; Korea Inst. of Ocean Sci. & Technol., South Korea; MEBiC09517.

Roseithermus sacchariphilus JCM 32374 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from Tidal sediment from Buksung-Po.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

Culture Collection Numbers

KCCM 43267 JCM 32374 MEBiC 09517

@ref 20215

Last LPSN update 2026-05-29 08:45:22

Domain Bacteria

Phylum Rhodothermota

Class Rhodothermia

Order Rhodothermales

Family Rhodothermaceae

Genus Roseithermus

Species Roseithermus sacchariphilus

Full scientific name Roseithermus sacchariphilus Park et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
67848	negative	2.3-3.3 µm	0.6-1.0 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
67848	2 mm	pinkish-cream	circular	3 days	Marine agar (MA)

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	55
67848	positive	growth	35-59
67848	positive	optimum	55

Culture pH

@ref	Ability	Type	PH	PH range
67848	positive	optimum	7
67848	positive	growth	4-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

67848

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125439		93.477

Halophily

@ref	Salt	Growth	Tested relation	Concentration
67848	NaCl	positive	growth	0.5-8 %(w/v)
67848	NaCl	positive	optimum	2-4 %(w/v)

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
67848	16651 ChEBI	(S)-lactate	-	carbon source
67848	64552 ChEBI	2-hydroxybutyrate	-	carbon source
67848	16763 ChEBI	2-oxobutanoate	+	carbon source
67848	16810 ChEBI	2-oxoglutarate	+	carbon source
67848	37054 ChEBI	3-hydroxybutyrate	-	carbon source
67848	73918 ChEBI	3-O-methyl-D-glucose	+	carbon source
67848	18101 ChEBI	4-hydroxyphenylacetic acid	-	carbon source
67848	546840 ChEBI	4-nitrophenyl alpha-D-galactoside	+	degradation
67848	30089 ChEBI	acetate	+	carbon source
67848	13705 ChEBI	acetoacetate	+	carbon source
67848	58187 ChEBI	alginate	-	degradation
67848	17925 ChEBI	alpha-D-glucose	+	carbon source
67848	36219 ChEBI	alpha-lactose	+	carbon source
67848	73706 ChEBI	bromosuccinate	-	carbon source
67848	17057 ChEBI	cellobiose	+	carbon source
67848	16947 ChEBI	citrate	-	carbon source
67848	18333 ChEBI	D-arabitol	-	carbon source
67848	29990 ChEBI	D-aspartate	-	carbon source
67848	15824 ChEBI	D-fructose	+	carbon source
67848	78697 ChEBI	D-fructose 6-phosphate	+	carbon source
67848	28847 ChEBI	D-fucose	+	carbon source
67848	12936 ChEBI	D-galactose	+	carbon source
67848	18024 ChEBI	D-galacturonic acid	-	carbon source
67848	30612 ChEBI	D-glucarate	-	carbon source
67848	8391 ChEBI	D-gluconate	+	carbon source
67848	14314 ChEBI	D-glucose 6-phosphate	+	carbon source
67848	15748 ChEBI	D-glucuronate	+	carbon source
67848	15588 ChEBI	D-malate	-	carbon source
67848	16899 ChEBI	D-mannitol	-	carbon source
67848	16024 ChEBI	D-mannose	+	carbon source
67848	16523 ChEBI	D-serine	-	carbon source
67848	17924 ChEBI	D-sorbitol	+	carbon source
67848	16551 ChEBI	D-trehalose	+	carbon source
67848	23652 ChEBI	dextrin	+	carbon source
67848	4853 ChEBI	esculin	+	degradation
67848	15740 ChEBI	formate	-	carbon source
67848	16537 ChEBI	galactarate	+	carbon source
67848	16865 ChEBI	gamma-aminobutyric acid	-	carbon source
67848	5291 ChEBI	gelatin	+	degradation
67848	5291 ChEBI	gelatin	+	carbon source
67848	28066 ChEBI	gentiobiose	+	carbon source
67848	32323 ChEBI	glucuronamide	+	carbon source
67848	17754 ChEBI	glycerol	-	carbon source
67848	70744 ChEBI	glycine-proline	-	carbon source
67848	17596 ChEBI	inosine	-	carbon source
67848	16977 ChEBI	L-alanine	-	carbon source
67848	16467 ChEBI	L-arginine	-	carbon source
67848	29991 ChEBI	L-aspartate	-	carbon source
67848	18287 ChEBI	L-fucose	+	carbon source
67848	17464 ChEBI	L-galactonic acid gamma-lactone	+	carbon source
67848	29988 ChEBI	L-glutamate	-	carbon source
67848	15971 ChEBI	L-histidine	-	carbon source
67848	15589 ChEBI	L-malate	+	carbon source
67848	57606 ChEBI	L-pyroglutamate	-	carbon source
67848	62345 ChEBI	L-rhamnose	-	carbon source
67848	17115 ChEBI	L-serine	-	carbon source
67848	17306 ChEBI	maltose	+	carbon source
67848	28053 ChEBI	melibiose	+	carbon source
67848	74611 ChEBI	methyl (R)-lactate	+	carbon source
67848	320055 ChEBI	methyl beta-D-glucopyranoside	+	carbon source
67848	51850 ChEBI	methyl pyruvate	-	carbon source
67848	17268 ChEBI	myo-inositol	-	carbon source
67848	63153 ChEBI	N-acetyl-D-mannosamine	+	carbon source
67848	28800 ChEBI	N-acetylgalactosamine	-	carbon source
67848	59640 ChEBI	N-acetylglucosamine	+	carbon source
67848	35418 ChEBI	n-acetylneuraminate	-	carbon source
67848	17632 ChEBI	nitrate	-	reduction
67848	17309 ChEBI	pectin	+	carbon source
67848	17272 ChEBI	propionate	-	carbon source
67848	26490 ChEBI	quinate	-	carbon source
67848	16634 ChEBI	raffinose	+	carbon source
67848	17814 ChEBI	salicin	+	carbon source
67848	17164 ChEBI	stachyose	+	carbon source
67848	17992 ChEBI	sucrose	+	carbon source
67848	32528 ChEBI	turanose	+	carbon source
67848	53423 ChEBI	tween 40	+	carbon source
67848	16199 ChEBI	urea	-	degradation

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
67848	2676	amoxicillin	10 µg (disc)
67848	28971	ampicillin	10 µg (disc)
67848	17698	chloramphenicol	30 µg (disc)
67848	48923	erythromycin	10 µg (disc)
67848	17833	gentamicin		10 µg (disc)
67848	6104	kanamycin		30 µg (disc)
67848	7507	neomycin	10 µg (disc)
67848	59066	oxolinate		2 µg (disc)
67848	27701	oxytetracycline	30 µg (disc)
67848	18208	penicillin g	10 Unit (disc)
67848	28077	rifampicin	2 µg (disc)
67848	17076	streptomycin		10 µg (disc)
67848	9332	sulfamethoxazole		25 µg (disc)
67848	27902	tetracycline	30 µg (disc)
67848	28001	vancomycin	70 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
67848	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
67848	catalase	+	1.11.1.6
67848	cytochrome oxidase	-	1.9.3.1

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Isolation procedure
67770	Tidal sediment from Buksung-Po		Incheon	Republic of Korea	KOR	Asia
67848	tidal sediment	2013-06-20	Buksung-Po, Incheon	Republic of Korea	KOR	Asia	35.4833	126.616 35.4833/126.616	marine agar 2216	sediment sample (0.1 g) was homogenized and inoculated in 10 ml of sterilized seawater with a piece (approx. 0.05 g) of Whatman filter paper no. 2 as a sole carbon source and incubated at 50°C for 1 month. After incubation, the first enrichment cultures were spread onto marine agar 2216.

Taxonmaps

69479

Global distribution of 16S sequence MG603595 (>99% sequence identity) for Rubricoccaceae from Microbeatlas

Aquatic Samples	981
Soil Samples	231
Animal Samples	162
Plant Samples	5
Total Samples	1379

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM328510v1 assembly for Roseithermus sacchariphilus MEBiC09517	complete	GCA_003285105	2026787.5	8109287738	2893045	71.51

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67848	Roseithermus sacchariphilus strain MEBiC09517 16S ribosomal RNA gene, partial sequence	MG603595	1528		2893045

GC content

@ref	GC-content (mol%)	Method
67848	68.65	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM328510v1 assembly for Roseithermus sacchariphilus MEBiC09517
BV-BRC: 2026787.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	62.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	68.23	no
125439	motility	BacteriaNetⓘ	yes	59.52	no
125439	spore_formation	BacteriaNetⓘ	no	93.48	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Rhodothermaceae bacterium strain MEBiC09517
PATRIC: 2026787.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	86.04	yes
125438	anaerobic	anaerobicⓘ	no	93.01	yes
125438	spore-forming	spore-formingⓘ	no	74.46	no
125438	aerobic	aerobicⓘ	yes	78.55	yes
125438	thermophilic	thermophileⓘ	no	73.92	no
125438	flagellated	motile2+ⓘ	no	60.94	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Roseithermus sacchariphilus gen. nov., sp. nov. and proposal of Salisaetaceae fam. nov., representing new family in the order Rhodothermales.	Park MJ, Oh JH, Yang SH, Kwon KK	Int J Syst Evol Microbiol	10.1099/ijsem.0.003293	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67848	Mi-Jeong Park, Ji Hye Oh, Sung-Hyun Yang, Kae Kyoung Kwon: Roseithermus sacchariphilus gen. nov., sp. nov. and proposal of Salisaetaceae fam. nov., representing new family in the order Rhodothermales. IJSEM 69: 1213 - 1219 2019 ( DOI 10.1099/ijsem.0.003293 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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Roseithermus sacchariphilus (KCCM 43267, JCM 32374, MEBiC 09517)

Name and taxonomic classification

Culture Collection Numbers

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003285105

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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