Clostridium fessum (KCTC 15633, JCM 32258)

Name: Clostridium fessum (KCTC 15633, JCM 32258)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164231

Type strain

Culture col. no. KCTC 15633 JCM 32258

NCBI tax ID(s) 2126740

Special Collections JCM KCTC

History JCM <-- G. Ko; Seoul Natl. Univ., South Korea; SNUG30386.

Links

Clostridium fessum JCM 32258 is a bacterium that was isolated from Fecal sample of a healthy Korean human.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 286500

KCTC 15633,JCM 32258

@ref 20215

Last LPSN update 2026-05-29 08:45:21

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium fessum

Full scientific name Clostridium fessum Seo et al. 2021

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	98.267

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species
67770	Fecal sample of a healthy Korean human	Homo sapiens

Taxonmaps

69479

Global distribution of 16S sequence KY992934 (>99% sequence identity) for Lachnospiraceae from Microbeatlas

Aquatic Samples	1948
Soil Samples	371
Animal Samples	104857
Plant Samples	69
Total Samples	107245

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM302471v1 assembly for Clostridium fessum SNUG30386	contig	GCA_003024715	2126740.3	2885131123	2126740	71.59

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Clostridium fessum strain SNUG30386 16S ribosomal RNA gene, partial sequence	KY992934	1401		2126740

GC content

@ref	GC-content (mol%)	Method
67770	48.3	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM302471v1 assembly for Clostridium fessum SNUG30386
NCBI: GCA_003024715

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	98.27	no
125439	motility	BacteriaNetⓘ	yes	77.17	no
125439	gram_stain	BacteriaNetⓘ	positive	51.33	no
125439	spore_formation	BacteriaNetⓘ	yes	87.02	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium fessum SNUG30386
NCBI: GCA_003024715.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	68.64	no
125438	anaerobic	anaerobicⓘ	yes	89.90	no
125438	aerobic	aerobicⓘ	no	95.74	no
125438	spore-forming	spore-formingⓘ	no	53.22	no
125438	thermophilic	thermophileⓘ	no	92.40	no
125438	flagellated	motile2+ⓘ	no	84.80	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Clostridium fessum sp. nov., isolated from human faeces.	Seo B, Jeon K, Baek I, Lee YM, Baek K, Ko G	Int J Syst Evol Microbiol	10.1099/ijsem.0.004579	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridium fessum (KCTC 15633, JCM 32258)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003024715

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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