Name: Bartonella rattaustraliani AUST/NH4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1642

Type strain:

Species: Bartonella rattaustraliani

Strain Designation: AUST/NH4

Culture col. no.: DSM 23500, CCUG 52161, CIP 109051, CSUR B609

Strain history: CIP <- 2005, P.E. Fournier, CNRS UMR 6020, Marseille, France: strain AUST/NH4

NCBI tax ID(s): 481139 (species)

SI-ID 364824

CCUG 52161, CIP 109051

Other strains from Bartonella rattaustraliani

B. rattaustraliani AUST/NH10, CIP 109054, CCUG 52165, ...
B. rattaustraliani AUST/NH9, CIP 109055, CCUG 52164, ...
B. rattaustraliani AUST/NH14, CIP 109059, CCUG 52169, ...
B. rattaustraliani AUST/NH18, CIP 109063, CCUG 52173, ...

Section

Bartonella rattaustraliani AUST/NH4 is a microaerophile, mesophilic, Gram-negative animal pathogen that was isolated from blood from rattus tunneyi.

Gram-negative
animal pathogen
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Bartonellaceae*
	Genus	*Bartonella*
	Species	**Bartonella rattaustraliani**
	Full Scientific Name (LPSN)	Bartonella rattaustraliani Gundi et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #23361]	Gram stain	negative
[Ref.: #122143]	Gram stain	negative

[Ref.: #23361]	Cell length	1-2 µm

[Ref.: #23361]	Cell width	0.5 µm

[Ref.: #23361]	Motility	no
[Ref.: #122143]	Motility	no

[Ref.: #122143]	Cell shape	rod-shaped

[Ref.: #17243]	Type of hemolysis	alpha/beta
[Ref.: #17243]	Hemolysis ability	1

[Ref.: #23361]	Colony size	0.5 mm
[Ref.: #23361]	Colony color	white
[Ref.: #23361]	Colony shape	irregular
[Ref.: #23361]	Incubation period	7 days
[Ref.: #23361]	Cultivation medium used	Columbia agar with 5 % sheep blood

[Ref.: #59445]	Incubation period	4 days

Information on culture and growth conditions Culture and growth conditions

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Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

Columbia agar with 5 % sheep blood

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Culture medium growth

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Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

CIP Medium 6-Boites-Biorad

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

CIP Medium 6

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #17243]	growth	37 °C
[Ref.: #23361]	growth	37 °C
[Ref.: #40110]	growth	37 °C

[Ref.: #17243]	Temperature range	mesophilic
[Ref.: #23361]	Temperature range	mesophilic
[Ref.: #40110]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #17243]	Oxygen tolerance	microaerophile
[Ref.: #59445]	Oxygen tolerance	microaerophile

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68377]	D-fructose ChEBI	-	builds acid from	* from API NH
[Ref.: #68377]	D-glucose ChEBI	-	builds acid from	* from API NH
[Ref.: #68377]	maltose ChEBI	-	builds acid from	* from API NH
[Ref.: #122143]	nitrate ChEBI	-	reduction
[Ref.: #122143]	nitrite ChEBI	-	reduction
[Ref.: #68377]	sucrose ChEBI	-	builds acid from	* from API NH
[Ref.: #68377]	tryptophan ChEBI	-	energy source	* from API NH

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #23361]	aminoglycoside antibiotic ChEBI	yes
[Ref.: #23361]	doxycycline ChEBI	yes
[Ref.: #23361]	macrolide antibiotic ChEBI	yes
[Ref.: #23361]	rifampicin ChEBI	yes
[Ref.: #23361]	vancomycin ChEBI		yes

	Metabolite production	Metabolite	Production
[Ref.: #122143]		indole ChEBI	no
[Ref.: #68377]		indole ChEBI	no	* from API NH

	Physiological tests	Metabolite	Indole test
[Ref.: #68377]		indole ChEBI	-	* from API NH

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #122143]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API NH
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API NH
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68377]	beta-lactamase	-	3.5.2.6	* from API NH
[Ref.: #17243]	catalase	-	1.11.1.6
[Ref.: #122143]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #17243]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68377]	gamma-glutamyltransferase	-	2.3.2.2	* from API NH
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68377]	lipase	-		* from API NH
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122143]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #122143]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122143]	oxidase	-
[Ref.: #68377]	proline-arylamidase	-	3.4.11.5	* from API NH
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH
[Ref.: #122143]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #17243]	6207	-	-	-	-	-	+/-	-	-	-	-	-	-	-
[Ref.: #17243]	5665	-	-	-	-	-	-	+/-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122143]	11634	-	-	+	+	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17243]	Sample type/isolated from	blood from rattus tunneyi
[Ref.: #17243]	Host species	Rattus tunneyi
[Ref.: #17243]	Geographic location (country and/or sea, region)	Queensland
[Ref.: #17243]	Country	Australia
[Ref.: #17243]	Country ISO 3 Code	AUS
[Ref.: #17243]	Continent	Australia and Oceania

[Ref.: #59445]	Sample type/isolated from	Rattus tunneyi blood
[Ref.: #59445]	Sampling date	1999
[Ref.: #59445]	Country	Australia
[Ref.: #59445]	Country ISO 3 Code	AUS
[Ref.: #59445]	Continent	Australia and Oceania

[Ref.: #122143]	Sample type/isolated from	Animal, Blood, Rattus tunneyi
[Ref.: #122143]	Geographic location (country and/or sea, region)	Queensland
[Ref.: #122143]	Country	Australia
[Ref.: #122143]	Country ISO 3 Code	AUS
[Ref.: #122143]	Continent	Australia and Oceania
[Ref.: #122143]	Isolation date	2000
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU111749 (>99% sequence identity) for Bartonella from Microbeatlas

Aquatic Samples	22
Soil Samples	29
Animal Samples	118
Plant Samples	3
Total Samples	172

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17243]	Pathogenicity (animal)	yes
[Ref.: #17243]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #122143]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17243]	Bartonella rattaustraliani strain AUST/NH4 16S ribosomal RNA gene, partial sequence	EU111749	1410	ENA	481139 tax ID
[Ref.: #20218]	Bartonella rattaustraliani strain AUST/NH4 16S-23S ribosomal RNA intergenic spacer, partial sequence	EU111760	1487	ENA	481139 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bartonella rattaustraliani AUST/NH4	GCA_000312565	contig	GenBank	1205681 tax ID	*
[Ref.: #66792]	Bartonella rattaustraliani AUST/NH4	1205681.4	wgs	PATRIC	1205681 tax ID	*
[Ref.: #66792]	Bartonella rattaustraliani AUST/NH4	2551306134	draft	JGI IMG/M	1205681 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bartonella rattaustraliani AUST/NH4 PATRIC: 1205681.4
[Ref.: #69480]	motile	no	91.167	yes
[Ref.: #69480]	gram-positive	no	97.892	no
[Ref.: #69480]	anaerobic	no	97.563	yes
[Ref.: #69480]	aerobic	no	95.27	no
[Ref.: #69480]	halophile	no	60.632	no
[Ref.: #69480]	spore-forming	no	97.536	no
[Ref.: #69480]	thermophile	no	91.973	yes
[Ref.: #69480]	glucose-util	no	50	no
[Ref.: #69480]	flagellated	no	97.74	yes
[Ref.: #69480]	glucose-ferment	no	73.776	no

Availability in culture collections External links

[Ref.: #17243]

Culture collection no.

DSM 23500, CCUG 52161, CIP 109051, CSUR B609

[Ref.: #71289]

SI-ID 364824

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome sequence of Bartonella rattaustraliani, a bacterium isolated from an Australian rat.	Merhej V, Croce O, Robert C, Rolain JM, Raoult D	J Bacteriol	10.1128/JB.01924-12	2012	*
Phylogeny	Bartonella rattaustraliani sp. nov., Bartonella queenslandensis sp. nov. and Bartonella coopersplainsensis sp. nov., identified in Australian rats.	Gundi VA, Taylor C, Raoult D, La Scola B	Int J Syst Evol Microbiol	10.1099/ijs.0.002865-0	2009	*

References

#17243

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23500

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23361

Vijay A. K. B. Gundi, Carmel Taylor, Didier Raoult, Bernard La Scola: Bartonella rattaustraliani sp. nov., Bartonella queenslandensis sp. nov. and Bartonella coopersplainsensis sp. nov., identified in Australian rats. IJSEM 59: 2956 - 2961 2009 ( DOI 10.1099/ijs.0.002865-0 , PubMed 19628592 )

#40110 ; Curators of the CIP;
#59445 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52161

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68377

Automatically annotated from API NH .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71289

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID364824.1 )

#122143 Collection of Institut Pasteur ; Curators of the CIP; CIP 109051
* These data were automatically processed and therefore are not curated

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