Bartonella rattaustraliani (DSM 23500, CCUG 52161, CIP 109051)

Name: Bartonella rattaustraliani (DSM 23500, CCUG 52161, CIP 109051)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1642

Type strain

Strain Designation AUST/NH4

Culture col. no. DSM 23500 CCUG 52161 CIP 109051 CSUR B609 AUST/NH4

NCBI tax ID(s) 481139

Special Collections DSMZ CCUG CIP Literature strains

History 2005, P.E. Fournier, CNRS UMR 6020, Marseille, France: strain AUST/NH4 <- CCUG <- P.-E. Fournier; AUST/NH4 <- V.A.K.B. Gundi CIP <- 2005, P.E. Fournier, CNRS UMR 6020, Marseille, France: strain AUST/NH4

Links

Bartonella rattaustraliani AUST/NH4 is a microaerophile, Gram-negative animal pathogen that was isolated from blood from rattus tunneyi.

Gram-negative microaerophile animal pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 364824

DSM 23500,CCUG 52161,CIP 109051

@ref 20215

Last LPSN update 2026-02-09 11:18:09

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Bartonellaceae

Genus Bartonella

Species Bartonella rattaustraliani

Full scientific name Bartonella rattaustraliani Gundi et al. 2009

BacDive ID	Other strains from **Bartonella rattaustraliani** (4)	Type strain
138564	B. rattaustraliani AUST/NH10, CIP 109054, CCUG 52165, CSUR B611
138565	B. rattaustraliani AUST/NH9, CIP 109055, CCUG 52164, CSUR B610
138567	B. rattaustraliani AUST/NH14, CIP 109059, CCUG 52169, CSUR B612
138569	B. rattaustraliani AUST/NH18, CIP 109063, CCUG 52173, CSUR B613

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
23361	negative	1-2 µm	0.5 µm
122143	negative			rod-shaped
125438	negative				98.783
125439	negative				92.3

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used	Type of hemolysis	Hemolysis ability
17243						alpha/beta	1
23361	0.5 mm	white	irregular	7 days	Columbia agar with 5 % sheep blood
59445				4 days
122143

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
17243	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
23361	Columbia agar with 5 % sheep blood
40110	MEDIUM 6 - Columbia agar with 10 % horse blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
122143	CIP Medium 6-Boites-Biorad	Medium recipe at CIP
122143	CIP Medium 6	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
17243	positive	growth	37
23361	positive	growth	37
40110	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
17243	microaerophile
59445	microaerophile

Spore formation

@ref	Spore formation	Confidence
125438		93.93
125439		99.5

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68377	15824 ChEBI	D-fructose	-	builds acid from	from API NH
68377	17634 ChEBI	D-glucose	-	builds acid from	from API NH
68377	17306 ChEBI	maltose	-	builds acid from	from API NH
122143	17632 ChEBI	nitrate	-	reduction
122143	16301 ChEBI	nitrite	-	reduction
68377	17992 ChEBI	sucrose	-	builds acid from	from API NH
68377	27897 ChEBI	tryptophan	-	energy source	from API NH

Antibiotic resistance

@ref	ChEBI	Metabolite
23361	22507	aminoglycoside antibiotic
23361	50845	doxycycline
23361	25105	macrolide antibiotic
23361	28077	rifampicin
23361	28001	vancomycin

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68377	35581 ChEBI	indole		from API NH
122143	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68377	35581 ChEBI	indole	-	from API NH

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
122143	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68377	alkaline phosphatase	-	3.1.3.1	from API NH
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68377	beta-galactosidase	-	3.2.1.23	from API NH
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68377	beta-lactamase	-	3.5.2.6	from API NH
17243	catalase	-	1.11.1.6
122143	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
17243	cytochrome-c oxidase	-	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68377	gamma-glutamyltransferase	-	2.3.2.2	from API NH
68382	leucine arylamidase	+	3.4.11.1	from API zym
68377	lipase	-		from API NH
68382	lipase (C 14)	-		from API zym
122143	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
122143	ornithine decarboxylase	-	4.1.1.17
122143	oxidase	-
68377	proline-arylamidase	-	3.4.11.5	from API NH
68382	trypsin	+	3.4.21.4	from API zym
68377	tryptophan deaminase	-	4.1.99.1	from API NH
122143	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122143	-	-	+	+	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
17243	-	-	-	-	-	+/-	-	-	-	-	-	-	-
17243	-	-	-	-	-	-	+/-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body Product	#Fluids	#Blood

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Sampling date	Isolation date
17243	blood from rattus tunneyi	Rattus tunneyi	Queensland	Australia	AUS	Australia and Oceania
59445	Rattus tunneyi blood			Australia	AUS	Australia and Oceania	1999
122143	Animal, Blood, Rattus tunneyi		Queensland	Australia	AUS	Australia and Oceania		2000

Taxonmaps

69479

Global distribution of 16S sequence EU111749 (>99% sequence identity) for Bartonella from Microbeatlas

Aquatic Samples	22
Soil Samples	29
Animal Samples	118
Plant Samples	3
Total Samples	172

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
17243		2	Risk group (German classification) According to TRBA 466
122143		2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM31256v2 assembly for Bartonella rattaustraliani AUST/NH4	contig	GCA_000312565	1205681.4	2551306134	1205681	57.03

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Bartonella rattaustraliani strain AUST/NH4 16S-23S ribosomal RNA intergenic spacer, partial sequence	EU111760	1487		481139
17243	Bartonella rattaustraliani strain AUST/NH4 16S ribosomal RNA gene, partial sequence	EU111749	1410		481139

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bartonella rattaustraliani AUST/NH4
NCBI: GCA_000312565

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.50	no
125439	motility	BacteriaNetⓘ	no	82.90	no
125439	gram_stain	BacteriaNetⓘ	negative	92.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	86.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bartonella rattaustraliani AUST/NH4
PATRIC: 1205681.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.78	yes
125438	anaerobic	anaerobicⓘ	no	88.88	yes
125438	spore-forming	spore-formingⓘ	no	93.93	no
125438	aerobic	aerobicⓘ	no	81.88	no
125438	thermophilic	thermophileⓘ	no	94.55	no
125438	flagellated	motile2+ⓘ	no	88.75	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome sequence of Bartonella rattaustraliani, a bacterium isolated from an Australian rat.	Merhej V, Croce O, Robert C, Rolain JM, Raoult D	J Bacteriol	10.1128/JB.01924-12	2012
Phylogeny	Bartonella rattaustraliani sp. nov., Bartonella queenslandensis sp. nov. and Bartonella coopersplainsensis sp. nov., identified in Australian rats.	Gundi VA, Taylor C, Raoult D, La Scola B	Int J Syst Evol Microbiol	10.1099/ijs.0.002865-0	2009

References

#17243	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23500
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#23361	Vijay A. K. B. Gundi, Carmel Taylor, Didier Raoult, Bernard La Scola: Bartonella rattaustraliani sp. nov., Bartonella queenslandensis sp. nov. and Bartonella coopersplainsensis sp. nov., identified in Australian rats. IJSEM 59: 2956 - 2961 2009 ( DOI 10.1099/ijs.0.002865-0 , PubMed 19628592 )
#40110	; Curators of the CIP;
#59445	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52161
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68377	Automatically annotated from API NH .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122143	Collection of Institut Pasteur ; Curators of the CIP; CIP 109051
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bartonella rattaustraliani (DSM 23500, CCUG 52161, CIP 109051)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API NH

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000312565

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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