Paraburkholderia panacisoli (KCTC 52951, JCM 32098, DCY 113)

Name: Paraburkholderia panacisoli (KCTC 52951, JCM 32098, DCY 113)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164192

Type strain

Culture col. no. KCTC 52951 JCM 32098 DCY 113

NCBI tax ID(s) 2603818

Special Collections JCM KCTC Literature strains

History D.-C. Yang and Y.-J. Kim; Kyung Hee Univ., South Korea; DCY113.

Links

Paraburkholderia panacisoli JCM 32098 is an obligate aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from Ginseng cultivation soil in Gochang-gun.

Gram-negative rod-shaped colony-forming obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 286132

KCTC 52951,JCM 32098

@ref 20215

Last LPSN update 2026-02-09 11:39:47

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Paraburkholderia

Species Paraburkholderia panacisoli

Full scientific name Paraburkholderia panacisoli Huo et al. 2021

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
68271	negative	1.2-2.0 µm	0.7-0.8 µm	rod-shaped
125438	negative					98.482

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
68271	0.3-0.5 mm	yellow	circular	3 days	Trypticase Soy Agar (TSA)

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30
68271	positive	growth	10-35
68271	positive	optimum	30

Culture pH

@ref	Ability	Type	PH
68271	positive	optimum	7
68271	positive	growth	4.5-7.5

Physiology and metabolism

Oxygen tolerance

68271

Oxygen toleranceobligate aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
68271	NaCl	positive	growth	0-3 %(w/v)
68271	NaCl	positive	optimum	0 %(w/v)

Observation

67770

Observationquinones: Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68271	16193 ChEBI	3-hydroxybenzoate	+	assimilation
68271	37054 ChEBI	3-hydroxybutyrate	+	assimilation
68271	17879 ChEBI	4-hydroxybenzoate	+	assimilation
68271	17128 ChEBI	adipate	+	assimilation
68271		casein	-	hydrolysis
68271	17634 ChEBI	D-glucose	-	assimilation
68271	16899 ChEBI	D-mannitol	+	assimilation
68271	16899 ChEBI	D-mannitol	-	assimilation
68271	16988 ChEBI	D-ribose	-	assimilation
68271	17924 ChEBI	D-sorbitol	+	assimilation
68271	27689 ChEBI	decanoate	-	assimilation
68271	16991 ChEBI	dna	-	hydrolysis
68271	4853 ChEBI	esculin	+	hydrolysis
68271	5291 ChEBI	gelatin	-	hydrolysis
68271	17234 ChEBI	glucose	+	fermentation
68271	28087 ChEBI	glycogen	-	assimilation
68271	17120 ChEBI	hexanoate	+	assimilation
68271	17240 ChEBI	itaconate	-	assimilation
68271	16977 ChEBI	L-alanine	+	assimilation
68271	30849 ChEBI	L-arabinose	-	assimilation
68271	18287 ChEBI	L-fucose	+	assimilation
68271	15971 ChEBI	L-histidine	+	assimilation
68271	17203 ChEBI	L-proline	+	assimilation
68271	62345 ChEBI	L-rhamnose	+	assimilation
68271	17115 ChEBI	L-serine	-	assimilation
68271	24996 ChEBI	lactate	+	assimilation
68271	25115 ChEBI	malate	+	assimilation
68271	28053 ChEBI	melibiose	-	assimilation
68271	17268 ChEBI	myo-inositol	-	assimilation
68271	506227 ChEBI	N-acetyl-D-glucosamine	+	assimilation
68271	59640 ChEBI	N-acetylglucosamine	-	assimilation
68271		potassium 2-dehydro-D-gluconate	+	assimilation
68271		potassium 5-dehydro-D-gluconate	+	assimilation
68271	32032 ChEBI	potassium gluconate	+	assimilation
68271	17272 ChEBI	propionate	-	assimilation
68271	17814 ChEBI	salicin	-	assimilation
68271	32954 ChEBI	sodium acetate	-	assimilation
68271	53258 ChEBI	sodium citrate	-	assimilation
68271	62983 ChEBI	sodium malonate	-	assimilation
68271	76282 ChEBI	suberate	+	assimilation
68271	17992 ChEBI	sucrose	-	assimilation
68271	53426 ChEBI	tween 80	+	hydrolysis
68271	18186 ChEBI	tyrosine	+	hydrolysis
68271	31011 ChEBI	valerate	+	assimilation

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
68271	3393	carbenicillin	100 µg
68271	3508	ceftazidime	30 µg
68271	48923	erythromycin	15 µg
68271	6472	lincomycin		15 µg
68271	7507	neomycin	30 µg
68271	28368	novobiocin	30 µg
68271	16869	oleandomycin	15 µg
68271	18208	penicillin g	10 Unit
68271	28077	rifampicin	5 µg
68271	27902	tetracycline	30 µg
68271	28001	vancomycin		30 µg

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68271	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
68271	acid phosphatase	+	3.1.3.2
68271	alkaline phosphatase	+	3.1.3.1
68271	beta-glucosidase	+	3.2.1.21
68271	catalase	+	1.11.1.6
68271	cytochrome oxidase	+	1.9.3.1
68271	esterase (C 4)	+
68271	esterase Lipase (C 8)	+
68271	leucine arylamidase	+	3.4.11.1
68271	lipase (C 14)	+
68271	naphthol-AS-BI-phosphohydrolase	+
68271	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

68271

Fatty acid	Percentage
C16:0	30.7
C18:1 w7c/C18:1 w6c	15.7
C17:0 cyclo	13.8
C19:0 cyclo w8c	9.2
C12:0 aldehyde/Unknown 10.928/C14:0 3OH/iso-C16:1 I	7.3
C16:1 w7c/C16:1 w6c	5.3
C18:0	4.8
C16:0 3OH	4.7
C14:0	3.6
C16:0 2OH	1.3
C16:1 2OH	0.8

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
67770	Ginseng cultivation soil in Gochang-gun		Republic of Korea	KOR	Asia
68271	ginseng cultivation soil	Gochang-gun	Republic of Korea	KOR	Asia	Tryptic soy agar	3 days	30

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM836993v1 assembly for Paraburkholderia panacisoli DCY113	scaffold	GCA_008369935	2603818.3	2900653453	2603818	45.82

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Paraburkholderia panacisoli 16S ribosomal RNA gene, partial sequence	KY694398	1468		2603818

GC content

@ref	GC-content (mol%)	Method
68271	62.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paraburkholderia panacisoli DCY113
NCBI: GCA_008369935.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.48	yes
125438	anaerobic	anaerobicⓘ	no	96.70	no
125438	aerobic	aerobicⓘ	yes	88.78	no
125438	spore-forming	spore-formingⓘ	no	82.26	no
125438	thermophilic	thermophileⓘ	no	97.42	yes
125438	flagellated	motile2+ⓘ	yes	86.16	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paraburkholderia panacisoli sp. nov., a potentially antagonistic bacterium against the root rot fungal pathogen Cylindrocarpon destructans, isolated from ginseng cultivation soil.	Huo Y, Chokkalingam M, Kang JP, Ahn JC, Yang DC	Arch Microbiol	10.1007/s00203-020-01840-z	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68271	Yue Huo, Mohan Chokkalingam, Jong-Pyo Kang, Jong-Chan Ahn & Deok-Chun Yang: Paraburkholderia panacisoli sp. nov., a potentially antagonistic bacterium against the root rot fungal pathogen Cylindrocarpon destructans, isolated from ginseng cultivation soil. Arch Microbiol 202: 1341 - 1347 2020 ( DOI 10.1007/s00203-020-01840-z )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paraburkholderia panacisoli (KCTC 52951, JCM 32098, DCY 113)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_008369935

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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