Name: Streptomyces prasinopilosus 4776
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16419

Type strain:

Species: Streptomyces prasinopilosus

Strain Designation: 4776

Culture col. no.: DSM 41884, CGMCC 4.3504, NRRL B-24621, JCM 15479

Strain history: CGMCC 4.3504 <-- W. Sun et al. 4776.

NCBI tax ID(s): 67344 (species)

SI-ID 400879

DSM 41884

Other strains from Streptomyces prasinopilosus

S. prasinopilosus DSM 40098, ATCC 19799, CBS 551.68, ... (type strain)
S. prasinopilosus A 12, E-193, DSM 40884, ATCC 19092

Section

Streptomyces prasinopilosus 4776 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil sample.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces prasinopilosus**
	Full Scientific Name (LPSN)	Streptomyces prasinopilosus Ettlinger et al. 1958 (Approved Lists 1980)

Synonym

Streptomyces emeiensis

Information on morphological and physiological properties Morphology

[Ref.: #32082]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %94.171

Multimedia content

[Ref.: #10647]

Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10647]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10647]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #10647]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #10647]	growth	28 °C
[Ref.: #32082]	growth	15-40 °C
[Ref.: #32082]	optimum	27.5 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #10647]	Temperature range	mesophilic
[Ref.: #32082]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32082]			optimum	7.5
[Ref.: #32082]			growth	5.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32082]

Oxygen tolerance

aerobe

[Ref.: #32082]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32082]		NaCl		growth	0.01-5.0	%
[Ref.: #32082]		NaCl		optimum	2.5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈), MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32082]	arabinose ChEBI	+	carbon source
[Ref.: #32082]	dextrin ChEBI	+	carbon source
[Ref.: #32082]	esculin ChEBI	+	hydrolysis
[Ref.: #32082]	myo-inositol ChEBI	+	carbon source
[Ref.: #32082]	nitrate ChEBI	+	reduction
[Ref.: #32082]	phenylalanine ChEBI	+	carbon source
[Ref.: #32082]	raffinose ChEBI	+	carbon source
[Ref.: #32082]	ribose ChEBI	+	carbon source
[Ref.: #32082]	tween 20 ChEBI	+	carbon source
[Ref.: #32082]	tween 40 ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10647]	Sample type/isolated from	soil sample
[Ref.: #10647]	Geographic location (country and/or sea, region)	Sichuan province, Emei mountain
[Ref.: #10647]	Country	China
[Ref.: #10647]	Country ISO 3 Code	CHN
[Ref.: #10647]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil from Emei Mountain
[Ref.: #67770]	Geographic location (country and/or sea, region)	Sichuan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ462649 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	3
Soil Samples	94
Animal Samples	8
Plant Samples	40
Total Samples	145

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10647]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #10647]	Streptomyces emeiensis strain 4776 16S ribosomal RNA gene, partial sequence	DQ462649	1400	ENA	67344 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces prasinopilosus CGMCC 4.3504	GCA_900101585	scaffold	GenBank	67344 tax ID
[Ref.: #67770]	Streptomyces prasinopilosus NRRL B-24621	GCA_001418395	scaffold	GenBank	67344 tax ID
[Ref.: #66792]	Streptomyces emeiensis strain CGMCC 4.3504	382503.6	wgs	PATRIC	67344 tax ID	*
[Ref.: #66792]	Streptomyces prasinopilosus CGMCC 4.3504	2663762722	draft	JGI IMG/M	67344 tax ID	*

[Ref.: #10647]	GC-content	70.8 mol%
[Ref.: #67770]	GC-content	70.8 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	72.9 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces prasinopilosus CGMCC 4.3504 NCBI: GCA_900101585.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces emeiensis strain CGMCC 4.3504 PATRIC: 382503.6
[Ref.: #69480]	gram-positive	yes	92.602	yes
[Ref.: #69480]	anaerobic	no	99.331	yes
[Ref.: #69480]	halophile	no	88.613	no
[Ref.: #69480]	spore-forming	yes	94.566	no
[Ref.: #69480]	glucose-util	yes	89.357	no
[Ref.: #69480]	aerobic	yes	93.715	yes
[Ref.: #69480]	motile	no	94.02	no
[Ref.: #69480]	flagellated	no	97.526	no
[Ref.: #69480]	thermophile	no	95.688	yes
[Ref.: #69480]	glucose-ferment	no	88.112	no

Availability in culture collections External links

[Ref.: #10647]

Culture collection no.

DSM 41884, CGMCC 4.3504, NRRL B-24621, JCM 15479

[Ref.: #85462]

SI-ID 400879

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces emeiensis sp. nov., a novel streptomycete from soil in China.	Sun W, Huang Y, Zhang YQ, Liu ZH	Int J Syst Evol Microbiol	10.1099/ijs.0.64934-0	2007	*

References

#10647

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41884

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32082

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28328 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85462

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400879.1 )

#28328

IJSEM 1635 2007 ( DOI 10.1099/ijs.0.64934-0 , PubMed 17625208 )

* These data were automatically processed and therefore are not curated

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Streptomyces prasinopilosus CGMCC 4.3504

Streptomyces emeiensis strain CGMCC 4.3504

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