Siculibacillus lacustris (DSM 29840, JCM 31761, SA-279)

Name: Siculibacillus lacustris (DSM 29840, JCM 31761, SA-279)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164126

Type strain

Strain Designation SA-279

Culture col. no. DSM 29840 JCM 31761 SA-279

NCBI tax ID(s) 1549641

Special Collections DSMZ JCM Literature strains

History JCM <-- T. Felföldi; Eötvös Loránd Univ., Hungary; SA-279.

Links

Siculibacillus lacustris SA-279 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from Water sample of a crater lake, Lake St. Ana.

Gram-negative motile rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 131919

JCM 31761

@ref 20215

Last LPSN update 2026-05-29 08:45:20

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Ancalomicrobiaceae

Genus Siculibacillus

Species Siculibacillus lacustris

Full scientific name Siculibacillus lacustris Felföldi et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
67885	negative	1.3-2.5 µm	0.6-0.8 µm	rod-shaped
125438	negative					96.05

Colony morphology

@ref	Colony size	Colony color	Colony shape	Medium used
67885	1-2 mm	greyish-white	circular	mR2A medium

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	20
67885	positive	growth	15-37
67885	positive	optimum	20-28

Culture pH

@ref	Ability	Type	PH
67885	positive	optimum	5-6
67885	positive	growth	5-7.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67885	aerobe
125439	obligate aerobe	91.491

Spore formation

@ref	Spore formation	Confidence
125438		90.075
125439		95.757

Observation

67770

Observationquinones: Q-10, Q-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
67885	17128 ChEBI	adipate	-	assimilation
67885	27613 ChEBI	amygdalin	-	assimilation
67885	18305 ChEBI	arbutin	-	assimilation
67885	17057 ChEBI	cellobiose	-	assimilation
67885	16947 ChEBI	citrate	+	assimilation
67885	17108 ChEBI	D-arabinose	+	assimilation
67885	18333 ChEBI	D-arabitol	-	assimilation
67885	15824 ChEBI	D-fructose	+	assimilation
67885	28847 ChEBI	D-fucose	-	assimilation
67885	12936 ChEBI	D-galactose	-	assimilation
67885	17634 ChEBI	D-glucose	+	assimilation
67885	62318 ChEBI	D-lyxose	+	assimilation
67885	16899 ChEBI	D-mannitol	+	assimilation
67885	16024 ChEBI	D-mannose	+	assimilation
67885	16988 ChEBI	D-ribose	+	assimilation
67885	17924 ChEBI	D-sorbitol	-	assimilation
67885	16443 ChEBI	D-tagatose	-	assimilation
67885	65327 ChEBI	D-xylose	+	assimilation
67885	27689 ChEBI	decanoate	-	assimilation
67885	17113 ChEBI	erythritol	-	assimilation
67885		esculin ferric citrate	-	assimilation
67885	16813 ChEBI	galactitol	-	assimilation
67885	28066 ChEBI	gentiobiose	-	assimilation
67885	17754 ChEBI	glycerol	-	assimilation
67885	28087 ChEBI	glycogen	-	assimilation
67885	15443 ChEBI	inulin	-	assimilation
67885	30849 ChEBI	L-arabinose	+	assimilation
67885	18403 ChEBI	L-arabitol	-	assimilation
67885	18287 ChEBI	L-fucose	+	assimilation
67885	62345 ChEBI	L-rhamnose	+	assimilation
67885	17266 ChEBI	L-sorbose	-	assimilation
67885	65328 ChEBI	L-xylose	-	assimilation
67885	17716 ChEBI	lactose	-	assimilation
67885	25115 ChEBI	malate	+	assimilation
67885	17306 ChEBI	maltose	+	assimilation
67885	6731 ChEBI	melezitose	-	assimilation
67885	28053 ChEBI	melibiose	-	assimilation
67885	320061 ChEBI	methyl alpha-D-glucopyranoside	-	assimilation
67885	43943 ChEBI	methyl alpha-D-mannoside	-	assimilation
67885	74863 ChEBI	methyl beta-D-xylopyranoside	-	assimilation
67885	17268 ChEBI	myo-inositol	-	assimilation
67885	59640 ChEBI	N-acetylglucosamine	-	assimilation
67885	18401 ChEBI	phenylacetate	-	assimilation
67885		potassium 2-dehydro-D-gluconate	-	assimilation
67885		potassium 5-dehydro-D-gluconate	-	assimilation
67885	32032 ChEBI	potassium gluconate	+	assimilation
67885	16634 ChEBI	raffinose	-	assimilation
67885	15963 ChEBI	ribitol	-	assimilation
67885	17814 ChEBI	salicin	-	assimilation
67885	53258 ChEBI	sodium citrate	-	assimilation
67885	28017 ChEBI	starch	-	assimilation
67885	17992 ChEBI	sucrose	-	assimilation
67885	27082 ChEBI	trehalose	-	assimilation
67885	32528 ChEBI	turanose	-	assimilation
67885	17151 ChEBI	xylitol	-	assimilation

Enzymes

@ref	Value	Activity	Ec
67885	acid phosphatase	+	3.1.3.2
67885	alkaline phosphatase	+	3.1.3.1
67885	alpha-chymotrypsin	-	3.4.21.1
67885	alpha-fucosidase	-	3.2.1.51
67885	alpha-galactosidase	-	3.2.1.22
67885	alpha-glucosidase	-	3.2.1.20
67885	alpha-mannosidase	-	3.2.1.24
67885	beta-galactosidase	-	3.2.1.23
67885	beta-glucosidase	-	3.2.1.21
67885	beta-glucuronidase	-	3.2.1.31
67885	catalase	+	1.11.1.6
67885	cystine arylamidase	-	3.4.11.3
67885	cytochrome oxidase	+	1.9.3.1
67885	esterase (C 4)	+
67885	esterase Lipase (C 8)	+
67885	gelatinase	-
67885	leucine arylamidase	-	3.4.11.1
67885	lipase (C 14)	-
67885	N-acetyl-beta-glucosaminidase	-	3.2.1.52
67885	naphthol-AS-BI-phosphohydrolase	+
67885	trypsin	-	3.4.21.4
67885	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Isolation procedure
67770	Water sample of a crater lake, Lake St. Ana		located in Ciomad Mountains, Harghita County	Romania	ROU	Europe
67885	freshwater crater lake water	2012-08	Lake St. Ana, Ciomad Mountains, Harghita County	Romania	ROU	Europe	46.1263	25.8877 46.1263/25.8877	lake water	solidified with 20 g l-1 agar	standard dilution plating technique

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67885	ASM432807v1 assembly for Siculibacillus lacustris SA-279	contig	GCA_004328075	2528834.3	2881072881	1549641	58.17

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67885	Siculibacillus lacustris strain SA-279 16S ribosomal RNA gene, partial sequence	KM083137	1403		1549641

GC content

@ref	GC-content (mol%)	Method
67885	69.2	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM432807v1 assembly for Siculibacillus lacustris SA-279
NCBI: GCA_004328075

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	62.36	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.49	no
125439	motility	BacteriaNetⓘ	yes	48.39	no
125439	spore_formation	BacteriaNetⓘ	no	95.76	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Ancalomicrobiaceae bacterium SA-279
PATRIC: 2528834.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.05	yes
125438	anaerobic	anaerobicⓘ	no	77.78	no
125438	spore-forming	spore-formingⓘ	no	90.08	no
125438	aerobic	aerobicⓘ	yes	67.03	yes
125438	thermophilic	thermophileⓘ	no	95.25	no
125438	flagellated	motile2+ⓘ	yes	71.07	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pinisolibacter aquiterrae sp. nov., a novel aromatic hydrocarbon-degrading bacterium isolated from benzene-, and xylene-degrading enrichment cultures, and emended description of the genus Pinisolibacter.	Bedics A, Banerjee S, Boka K, Toth E, Benedek T, Kriszt B, Tancsics A	Int J Syst Evol Microbiol	10.1099/ijsem.0.005229	2022
Phylogeny	Siculibacillus lacustris gen. nov., sp. nov., a new rosette-forming bacterium isolated from a freshwater crater lake (Lake St. Ana, Romania).	Felfoldi T, Marton Z, Szabo A, Mentes A, Boka K, Marialigeti K, Mathe I, Koncz M, Schumann P, Toth E	Int J Syst Evol Microbiol	10.1099/ijsem.0.003385	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67885	Tamás Felföldi, Zsuzsanna Márton, Attila Szabó, Anikó Mentes, Károly Bóka, Károly Márialigeti, István Máthé, Mihály Koncz, Peter Schumann, Erika Tóth: Siculibacillus lacustris gen. nov., sp. nov., a new rosette-forming bacterium isolated from a freshwater crater lake (Lake St. Ana, Romania). IJSEM 69: 1731 - 1736 2019 ( DOI 10.1099/ijsem.0.003385 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Siculibacillus lacustris (DSM 29840, JCM 31761, SA-279)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_004328075

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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