Indiicoccus explosivorum (MTCC 12608, KCTC 33871, JCM 31737)

Name: Indiicoccus explosivorum (MTCC 12608, KCTC 33871, JCM 31737)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164124

Type strain

Strain Designation S5-TSA-19

Culture col. no. MTCC 12608 KCTC 33871 JCM 31737 S5-TSA-19

NCBI tax ID(s) 1917864

Special Collections JCM KCTC Literature strains

History JCM <-- S. Mayilraj; MTCC, India; S5-TSA-19.

Links

Indiicoccus explosivorum S5-TSA-19 is an obligate aerobe, Gram-positive, coccus-shaped bacterium that forms circular colonies and was isolated from Soil contaminated with explosives.

Gram-positive coccus-shaped colony-forming obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 26135

KCTC 33871,JCM 31737

@ref 20215

Last LPSN update 2026-05-29 08:45:20

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Caryophanaceae

Genus Indiicoccus

Species Indiicoccus explosivorum

Full scientific name Indiicoccus explosivorum Pal et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape	Motility
68162	positive	1.0-1.2 µm	coccus-shaped

Colony morphology

@ref	Colony color	Colony shape
68162	pink	circular

Pigmentation

@ref	Production	Name
68162		carotenoid pigment

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	28
68162	positive	optimum	30-35

Culture pH

@ref	Ability	Type	PH
68162	positive	optimum	7-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
68162	obligate aerobe
125439	facultative anaerobe	91.82

Spore formation

68162

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
68162	NaCl	positive	growth	0-15 %(w/v)

Observation

67770

Observationquinones: MK-7, MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68162	64552 ChEBI	2-hydroxybutyrate	-	oxidation
68162	37054 ChEBI	3-hydroxybutyrate	-	oxidation
68162	73918 ChEBI	3-O-methyl-D-glucose	-	oxidation
68162	13705 ChEBI	acetoacetate	+	oxidation
68162	13705 ChEBI	acetoacetate	-	oxidation
68162	22599 ChEBI	arabinose	-	builds acid from
68162	73706 ChEBI	bromosuccinate	-	oxidation
68162	17057 ChEBI	cellobiose	-	builds acid from
68162	29990 ChEBI	D-aspartate	-	oxidation
68162	15824 ChEBI	D-fructose	+/-	oxidation
68162	78697 ChEBI	D-fructose 6-phosphate	+	oxidation
68162	28847 ChEBI	D-fucose	+/-	oxidation
68162	12936 ChEBI	D-galactose	-	oxidation
68162	18024 ChEBI	D-galacturonic acid	-	oxidation
68162	8391 ChEBI	D-gluconate	-	oxidation
68162	17634 ChEBI	D-glucose	+	builds acid from
68162	14314 ChEBI	D-glucose 6-phosphate	+/-	oxidation
68162		D-lactate	-	oxidation
68162		D-lactic acid methyl ester	-	oxidation
68162	15588 ChEBI	D-malate	-	oxidation
68162	16523 ChEBI	D-serine	-	oxidation
68162	4853 ChEBI	esculin	-	hydrolysis
68162	15740 ChEBI	formate	-	oxidation
68162	28757 ChEBI	fructose	-	builds acid from
68162	71321 ChEBI	fusidate	-	oxidation
68162	35390 ChEBI	galactarate	-	oxidation
68162	16813 ChEBI	galactitol	-	builds acid from
68162	28260 ChEBI	galactose	-	builds acid from
68162	5291 ChEBI	gelatin	+	hydrolysis
68162	28066 ChEBI	gentiobiose	-	oxidation
68162	32323 ChEBI	glucuronamide	+	oxidation
68162	24297 ChEBI	glucuronate	-	oxidation
68162	17754 ChEBI	glycerol	-	oxidation
68162	32735 ChEBI	guanidinium chloride	-	oxidation
68162	17596 ChEBI	inosine	-	oxidation
68162	15443 ChEBI	inulin	+	builds acid from
68162	16467 ChEBI	L-arginine	-	oxidation
68162	18287 ChEBI	L-fucose	+/-	oxidation
68162	17464 ChEBI	L-galactonic acid gamma-lactone	+/-	oxidation
68162	15971 ChEBI	L-histidine	-	oxidation
68162	15589 ChEBI	L-malate	-	oxidation
68162	18183 ChEBI	L-pyroglutamic acid	-	oxidation
68162	62345 ChEBI	L-rhamnose	-	oxidation
68162	17115 ChEBI	L-serine	-	oxidation
68162	17716 ChEBI	lactose	-	builds acid from
68162	48607 ChEBI	lithium chloride	+	oxidation
68162	17306 ChEBI	maltose	-	builds acid from
68162	29864 ChEBI	mannitol	-	builds acid from
68162	37684 ChEBI	mannose	-	builds acid from
68162	28053 ChEBI	melibiose	-	builds acid from
68162	28053 ChEBI	melibiose	-	oxidation
68162	37657 ChEBI	methyl D-glucoside	-	oxidation
68162	50694 ChEBI	minocycline	-	oxidation
68162	17268 ChEBI	myo-inositol	-	builds acid from
68162	17268 ChEBI	myo-inositol	-	oxidation
68162	63154 ChEBI	N-acetyl-beta-D-mannosamine	-	oxidation
68162	28037 ChEBI	n-acetyl-D-galactosamine	-	oxidation
68162	506227 ChEBI	N-acetyl-D-glucosamine	-	oxidation
68162		n-acetyl-neuraminic acid	-	oxidation
68162	100147 ChEBI	nalidixic acid	+	oxidation
68162	17632 ChEBI	nitrate	+	reduction
68162	17309 ChEBI	pectin	-	oxidation
68162	17272 ChEBI	propionate	+/-	oxidation
68162	26490 ChEBI	quinate	-	oxidation
68162	16634 ChEBI	raffinose	-	builds acid from
68162	16634 ChEBI	raffinose	-	oxidation
68162	26546 ChEBI	rhamnose	-	builds acid from
68162	15963 ChEBI	ribitol	-	builds acid from
68162	17814 ChEBI	salicin	-	builds acid from
68162	17814 ChEBI	salicin	-	oxidation
68162	75229 ChEBI	sodium bromate	-	oxidation
68162	64103 ChEBI	sodium butyrate	-	oxidation
68162	26710 ChEBI	sodium chloride	+	oxidation
68162	75228 ChEBI	sodium lactate	-	oxidation
68162	30911 ChEBI	sorbitol	-	builds acid from
68162	17164 ChEBI	stachyose	-	oxidation
68162	28017 ChEBI	starch	-	hydrolysis
68162	17992 ChEBI	sucrose	+	builds acid from
68162	75193 ChEBI	tetrazolium violet	+	oxidation
68162	27082 ChEBI	trehalose	-	builds acid from
68162	27082 ChEBI	trehalose	-	oxidation
68162	45735 ChEBI	troleandomycin	-	oxidation
68162	32528 ChEBI	turanose	-	oxidation
68162	53423 ChEBI	tween 40	+/-	oxidation
68162	18222 ChEBI	xylose	-	builds acid from

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.	Sensitivity conc.
68162	49566	cloxacillin	1 µg (disc)
68162	100147	nalidixic acid		10 µg (disc)
68162	17334	penicillin	10 Unit (disc)
68162	75193	tetrazolium violet

Enzymes

@ref	Value	Activity	Ec
68162	acid phosphatase	+	3.1.3.2
68162	catalase	+	1.11.1.6
68162	cytochrome oxidase	-	1.9.3.1
68162	esterase (C 4)	+
68162	esterase Lipase (C 8)	+
68162	naphthol-AS-BI-phosphohydrolase	+

Fatty acid profile

Metadata FA analysis

@ref

68162

Fatty acid	Percentage
C15:0 iso	45.8
C15:0 anteiso	18.4
C16:0 iso	7.9
C17:0 iso	6.6
C14:0 iso	3.9
C16:1 w7c alcohol	3.6
C17:0 anteiso	2.3
C16:0	2.2
C17:1 iso I/C17:1 anteiso B	1.9
C16:1 w11c	1

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
67770	Soil contaminated with explosives	Panchkula, Haryana	India	IND	Asia
68162	soil samples from an explosives-contaminated site	Panchkula, Haryana	India	IND	Asia	30.6433	76.8911 30.6433/76.8911	TSBA	2-3 weeks	30

Taxonmaps

69479

Global distribution of 16S sequence LT631687 (>99% sequence identity) for Indiicoccus explosivorum subclade from Microbeatlas

Aquatic Samples	71
Soil Samples	121
Animal Samples	90
Plant Samples	12
Total Samples	294

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
68162	ASM216700v1 assembly for Indiicoccus explosivorum	contig	GCA_002167005	569883.3	2886434805	1917864	58.7

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
68162	Planomicrobium sp. S5-TSA-19 partial 16S rRNA gene, isolate S5-TSA-19	LT631687	1516		1917864

GC content

@ref	GC-content (mol%)	Method
68162	53.5	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM216700v1 assembly for Indiicoccus explosivorum
NCBI: GCA_002167005

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.82	no
125439	gram_stain	BacteriaNetⓘ	variable	64.80	no
125439	motility	BacteriaNetⓘ	yes	71.52	no
125439	spore_formation	BacteriaNetⓘ	yes	61.19	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	2,4,6-trinitrotoluene (TNT) degradation by Indiicoccus explosivorum (S5-TSA-19).	Lamba J, Anand S, Dutta J, Rai PK	Arch Microbiol	10.1007/s00203-022-03057-8	2022
Phylogeny	Indiicoccus explosivorum gen. nov., sp. nov., isolated from an explosives waste contaminated site.	Pal Y, Mayilraj S, Paul M, Schumann P, Krishnamurthi S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003541	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68162	Yash Pal, Shanmugam Mayilraj, Mohit Paul, Peter Schumann and Srinivasan Krishnamurthi: Indiicoccus explosivorum gen. nov., sp. nov., isolated from an explosives waste contaminated site. IJSEM 69: 2555 - 2564 2019 ( DOI 10.1099/ijsem.0.003541 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Indiicoccus explosivorum (MTCC 12608, KCTC 33871, JCM 31737)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002167005

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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