Name: Indiicoccus explosivorum S5-TSA-19
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164124

Type strain:

Species: Indiicoccus explosivorum

Strain Designation: S5-TSA-19

Culture col. no.: JCM 31737, KCTC 33871, MTCC 12608

Strain history: S. Mayilraj; MTCC, India; S5-TSA-19.

NCBI tax ID(s): 1917864 (species)

Special Collections

Section

Indiicoccus explosivorum S5-TSA-19 is an obligate aerobe, Gram-positive, coccus-shaped bacterium that forms circular colonies and was isolated from Soil contaminated with explosives.

coccus-shaped
colony-forming
Gram-positive
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Indiicoccus*
	Species	**Indiicoccus explosivorum**
	Full Scientific Name (LPSN)	Indiicoccus explosivorum Pal et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #68162]	Gram stain	positive

[Ref.: #68162]	Cell length	1.0-1.2 µm

[Ref.: #68162]	Cell shape	coccus-shaped

[Ref.: #68162]	Motility	no

[Ref.: #68162]	Colony color	pink
[Ref.: #68162]	Colony shape	circular

[Ref.: #68162]	Pigment production	no
[Ref.: #68162]	Pigment name	Carotenoid pigment

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C
[Ref.: #68162]			optimum	30-35 °C

	pH	Kind of pH		pH
[Ref.: #68162]			optimum	7-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68162]

Oxygen tolerance

obligate aerobe

[Ref.: #68162]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68162]		NaCl		growth	0-15	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-7, MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68162]	(-)-quinic acid ChEBI	-	oxidation
[Ref.: #68162]	2-hydroxybutyrate ChEBI	-	oxidation
[Ref.: #68162]	3-hydroxybutyrate ChEBI	-	oxidation
[Ref.: #68162]	3-O-methyl-D-glucose ChEBI	-	oxidation
[Ref.: #68162]	acetoacetate ChEBI	+	oxidation
[Ref.: #68162]	acetoacetate ChEBI	-	oxidation
[Ref.: #68162]	arabinose ChEBI	-	builds acid from
[Ref.: #68162]	bromosuccinate ChEBI	-	oxidation
[Ref.: #68162]	cellobiose ChEBI	-	builds acid from
[Ref.: #68162]	D-aspartate ChEBI	-	oxidation
[Ref.: #68162]	D-fructose ChEBI	+/-	oxidation
[Ref.: #68162]	D-fructose 6-phosphate ChEBI	+	oxidation
[Ref.: #68162]	D-fucose ChEBI	+/-	oxidation
[Ref.: #68162]	D-galactose ChEBI	-	oxidation
[Ref.: #68162]	D-galacturonic acid ChEBI	-	oxidation
[Ref.: #68162]	D-gluconate ChEBI	-	oxidation
[Ref.: #68162]	D-glucose ChEBI	+	builds acid from
[Ref.: #68162]	D-glucose 6-phosphate ChEBI	+/-	oxidation
[Ref.: #68162]	D-lactate	-	oxidation
[Ref.: #68162]	D-lactic acid methyl ester	-	oxidation
[Ref.: #68162]	D-malate ChEBI	-	oxidation
[Ref.: #68162]	D-salicin ChEBI	-	oxidation
[Ref.: #68162]	D-serine ChEBI	-	oxidation
[Ref.: #68162]	esculin ChEBI	-	hydrolysis
[Ref.: #68162]	formate ChEBI	-	oxidation
[Ref.: #68162]	fructose ChEBI	-	builds acid from
[Ref.: #68162]	fusidate ChEBI	-	oxidation
[Ref.: #68162]	galactarate ChEBI	-	oxidation
[Ref.: #68162]	galactitol ChEBI	-	builds acid from
[Ref.: #68162]	galactose ChEBI	-	builds acid from
[Ref.: #68162]	gelatin ChEBI	+	hydrolysis
[Ref.: #68162]	gentiobiose ChEBI	-	oxidation
[Ref.: #68162]	glucuronamide ChEBI	+	oxidation
[Ref.: #68162]	glucuronate ChEBI	-	oxidation
[Ref.: #68162]	glycerol ChEBI	-	oxidation
[Ref.: #68162]	guanidinium chloride ChEBI	-	oxidation
[Ref.: #68162]	inosine ChEBI	-	oxidation
[Ref.: #68162]	inulin ChEBI	+	builds acid from
[Ref.: #68162]	L-arginine ChEBI	-	oxidation
[Ref.: #68162]	L-fucose ChEBI	+/-	oxidation
[Ref.: #68162]	L-galactonic acid gamma-lactone ChEBI	+/-	oxidation
[Ref.: #68162]	L-histidine ChEBI	-	oxidation
[Ref.: #68162]	L-malate ChEBI	-	oxidation
[Ref.: #68162]	L-pyroglutamic acid ChEBI	-	oxidation
[Ref.: #68162]	L-rhamnose ChEBI	-	oxidation
[Ref.: #68162]	L-serine ChEBI	-	oxidation
[Ref.: #68162]	lactose ChEBI	-	builds acid from
[Ref.: #68162]	lithium chloride ChEBI	+	oxidation
[Ref.: #68162]	maltose ChEBI	-	builds acid from
[Ref.: #68162]	mannitol ChEBI	-	builds acid from
[Ref.: #68162]	mannose ChEBI	-	builds acid from
[Ref.: #68162]	melibiose ChEBI	-	builds acid from
[Ref.: #68162]	melibiose ChEBI	-	oxidation
[Ref.: #68162]	methyl D-glucoside ChEBI	-	oxidation
[Ref.: #68162]	minocycline ChEBI	-	oxidation
[Ref.: #68162]	myo-inositol ChEBI	-	builds acid from
[Ref.: #68162]	myo-inositol ChEBI	-	oxidation
[Ref.: #68162]	N-acetyl-beta-D-mannosamine ChEBI	-	oxidation
[Ref.: #68162]	n-acetyl-D-galactosamine ChEBI	-	oxidation
[Ref.: #68162]	N-acetyl-D-glucosamine ChEBI	-	oxidation
[Ref.: #68162]	n-acetyl-neuraminic acid	-	oxidation
[Ref.: #68162]	nalidixic acid ChEBI	+	oxidation
[Ref.: #68162]	nitrate ChEBI	+	reduction
[Ref.: #68162]	pectin ChEBI	-	oxidation
[Ref.: #68162]	propionate ChEBI	+/-	oxidation
[Ref.: #68162]	raffinose ChEBI	-	builds acid from
[Ref.: #68162]	raffinose ChEBI	-	oxidation
[Ref.: #68162]	rhamnose ChEBI	-	builds acid from
[Ref.: #68162]	ribitol ChEBI	-	builds acid from
[Ref.: #68162]	salicin ChEBI	-	builds acid from
[Ref.: #68162]	sodium bromate ChEBI	-	oxidation
[Ref.: #68162]	sodium butyrate ChEBI	-	oxidation
[Ref.: #68162]	sodium chloride ChEBI	+	oxidation
[Ref.: #68162]	sodium lactate ChEBI	-	oxidation
[Ref.: #68162]	sorbitol ChEBI	-	builds acid from
[Ref.: #68162]	stachyose ChEBI	-	oxidation
[Ref.: #68162]	starch ChEBI	-	hydrolysis
[Ref.: #68162]	sucrose ChEBI	+	builds acid from
[Ref.: #68162]	tetrazolium violet ChEBI	+	oxidation
[Ref.: #68162]	trehalose ChEBI	-	builds acid from
[Ref.: #68162]	trehalose ChEBI	-	oxidation
[Ref.: #68162]	troleandomycin ChEBI	-	oxidation
[Ref.: #68162]	turanose ChEBI	-	oxidation
[Ref.: #68162]	tween 40 ChEBI	+/-	oxidation
[Ref.: #68162]	xylose ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #68162]	cloxacillin ChEBI				yes	1	µg (disc)
[Ref.: #68162]	nalidixic acid ChEBI	yes	10	µg (disc)
[Ref.: #68162]	penicillin ChEBI				yes	10	Unit (disc)
[Ref.: #68162]	tetrazolium violet ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #68162]	acid phosphatase	+	3.1.3.2
[Ref.: #68162]	catalase	+	1.11.1.6
[Ref.: #68162]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68162]	esterase (C 4)	+
[Ref.: #68162]	esterase Lipase (C 8)	+
[Ref.: #68162]	naphthol-AS-BI-phosphohydrolase	+

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68162]

Fatty acid	Percentage
C15:0 iso	45.8
C15:0 anteiso	18.4
C16:0 iso	7.9
C17:0 iso	6.6
C14:0 iso	3.9
C16:1 w7c alcohol	3.6
C17:0 anteiso	2.3
C16:0	2.2
C17:1 iso I/C17:1 anteiso B	1.9
C16:1 w11c	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil contaminated with explosives
[Ref.: #67770]	Geographic location (country and/or sea, region)	Panchkula, Haryana
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia

[Ref.: #68162]	Sample type/isolated from	soil samples from an explosives-contaminated site
[Ref.: #68162]	Geographic location (country and/or sea, region)	Panchkula, Haryana
[Ref.: #68162]	Country	India
[Ref.: #68162]	Country ISO 3 Code	IND
[Ref.: #68162]	Continent	Asia
[Ref.: #68162]	Geographic location	30.6433°/76.8911°
[Ref.: #68162]	Enrichment culture	TSBA
[Ref.: #68162]	Enrichment culture duration	2-3 weeks
[Ref.: #68162]	Enrichment culture temperature	30 ̊C
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LT631687 (>99% sequence identity) for Indiicoccus explosivorum subclade from Microbeatlas

Aquatic Samples	71
Soil Samples	121
Animal Samples	90
Plant Samples	12
Total Samples	294

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68162]	Planomicrobium sp. S5-TSA-19 partial 16S rRNA gene, isolate S5-TSA-19	LT631687	1516	GenBank ENA	1917864 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68162]	Indiicoccus explosivorum SS1994	GCA_002167005	contig	GenBank ENA	1917864 tax ID
[Ref.: #66792]	Indiicoccus explosivorum S5-TSA-19	2886434805	draft	JGI IMG/M	1917864 tax ID	*

[Ref.: #68162]

GC-content

53.5 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 31737, KCTC 33871, MTCC 12608

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Indiicoccus explosivorum gen. nov., sp. nov., isolated from an explosives waste contaminated site.	Pal Y, Mayilraj S, Paul M, Schumann P, Krishnamurthi S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003541	2019	*
Pathogenicity	2,4,6-trinitrotoluene (TNT) degradation by Indiicoccus explosivorum (S5-TSA-19).	Lamba J, Anand S, Dutta J, Rai PK	Arch Microbiol	10.1007/s00203-022-03057-8	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68162

Yash Pal, Shanmugam Mayilraj, Mohit Paul, Peter Schumann and Srinivasan Krishnamurthi: Indiicoccus explosivorum gen. nov., sp. nov., isolated from an explosives waste contaminated site. IJSEM 69: 2555 - 2564 2019 ( DOI 10.1099/ijsem.0.003541 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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