Nitrincola tapanii (MCC 2863, JCM 31570, KCTC 52390)

Name: Nitrincola tapanii (MCC 2863, JCM 31570, KCTC 52390)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164093

Type strain

Strain Designation MEB193

Culture col. no. MCC 2863 JCM 31570 KCTC 52390 MEB193

NCBI tax ID(s) 1708751

Special Collections JCM Literature strains KCTC

History JCM <-- A. A. Joshi; NCCS, India; MEB193.

Links

Nitrincola tapanii MEB193 is a Gram-negative, motile, rod-shaped bacterium that was isolated from Sediment from Lonar Lake.

Gram-negative motile rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 285775

KCTC 52390,JCM 31570

@ref 20215

Last LPSN update 2026-05-29 08:45:19

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Oceanospirillaceae

Genus Nitrincola

Species Nitrincola tapanii

Full scientific name Nitrincola tapanii Joshi et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
69574	negative	0.9-1.6 µm	0.2-0.6 µm	rod-shaped	polar
125438	negative					98.947
125439	negative					95.03

Colony morphology

@ref	Colony size	Colony color	Medium used
69574	1-2 mm	faint cream	Nutrient agar (NA)

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition
69574	Nutrient agar (NA)		(pH 9.0) medium

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30
69574	positive	growth	30
69574	positive	optimum	10-37

Culture pH

@ref	Ability	Type	PH
69574	positive	optimum	9
69574	positive	growth	8.0-10.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	90.048

Spore formation

@ref	Spore formation	Confidence
125439		99.876
125438		94.815

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69574	NaCl	positive	growth	0-6 %(w/v)
69574	NaCl	positive	optimum	1 %(w/v)

Observation

@ref	Observation
69574	The strain is alkaliphilic. And the colonies are faint cream, entire, glistening, smooth and flat.
69574	No fluorescent or visible pigments are produced on solid King's media A or B
69574	The predominant polar lipids are phosphatidylglycerol and diphosphatidylglycerol.

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69574	16763 ChEBI	2-oxobutanoate	-	assimilation
69574		alpha-hydroxybutyrate	-	assimilation
69574	73706 ChEBI	bromosuccinate	-	assimilation
69574		casein	-	hydrolysis
69574	17057 ChEBI	cellobiose	-	assimilation
69574	18333 ChEBI	D-arabitol	-	assimilation
69574	29990 ChEBI	D-aspartate	-	assimilation
69574	18391 ChEBI	D-gluconate	-	assimilation
69574	15588 ChEBI	D-malate	-	assimilation
69574	16899 ChEBI	D-mannitol	-	assimilation
69574	33801 ChEBI	D-saccharate	-	assimilation
69574	16523 ChEBI	D-serine	-	assimilation
69574	17924 ChEBI	D-sorbitol	-	assimilation
69574	23652 ChEBI	dextrin	-	assimilation
69574	16991 ChEBI	dna	-	hydrolysis
69574		esculin hydrolysate	-	assimilation
69574	15740 ChEBI	formate	-	assimilation
69574	16537 ChEBI	galactarate	-	assimilation
69574	16865 ChEBI	gamma-aminobutyric acid	-	assimilation
69574	5291 ChEBI	gelatin	-	assimilation
69574	5291 ChEBI	gelatin	-	hydrolysis
69574	17754 ChEBI	glycerol	-	assimilation
69574	70744 ChEBI	glycyl-L-proline	-	assimilation
69574	16136 ChEBI	hydrogen sulfide	-	assimilation
69574	35581 ChEBI	indole	-	assimilation
69574	17596 ChEBI	inosine	-	assimilation
69574	16977 ChEBI	L-alanine	-	assimilation
69574	16467 ChEBI	L-arginine	-	assimilation
69574	29991 ChEBI	L-aspartate	-	assimilation
69574	29985 ChEBI	L-glutamate	-	assimilation
69574	15971 ChEBI	L-histidine	-	assimilation
69574	15589 ChEBI	L-malate	-	assimilation
69574	90601 ChEBI	L-pyroglutamic acid 2-naphthylamide	-	assimilation
69574	17115 ChEBI	L-serine	-	assimilation
69574	24996 ChEBI	lactate	-	assimilation
69574	17716 ChEBI	lactose	-	assimilation
69574	17306 ChEBI	maltose	-	assimilation
69574	74611 ChEBI	methyl (R)-lactate	-	assimilation
69574	37657 ChEBI	methyl D-glucoside	-	assimilation
69574	51850 ChEBI	methyl pyruvate	-	assimilation
69574	17268 ChEBI	myo-inositol	-	assimilation
69574	63154 ChEBI	N-acetyl-beta-D-mannosamine	-	assimilation
69574	28037 ChEBI	n-acetyl-D-galactosamine	-	assimilation
69574	506227 ChEBI	N-acetyl-D-glucosamine	-	assimilation
69574		n-acetyl-neuraminic acid	-	assimilation
69574	17632 ChEBI	nitrate	-	reduction
69574	17309 ChEBI	pectin	-	assimilation
69574	17272 ChEBI	propionate	-	assimilation
69574	26490 ChEBI	quinate	-	assimilation
69574	26490 ChEBI	quinate	-	assimilation
69574	16634 ChEBI	raffinose	-	assimilation
69574	17814 ChEBI	salicin	-	assimilation
69574	17164 ChEBI	stachyose	-	assimilation
69574	28017 ChEBI	starch	-	hydrolysis
69574	17992 ChEBI	sucrose	-	assimilation
69574	27082 ChEBI	trehalose	-	assimilation
69574	32528 ChEBI	turanose	-	assimilation
69574	53423 ChEBI	tween 40	-	assimilation
69574	53426 ChEBI	tween 80	-	hydrolysis
69574	16199 ChEBI	urea	-	hydrolysis

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test	Citrate test	Methylred-test
69574	16991 ChEBI	dna	+	-	+
69574	35581 ChEBI	indole		-		-

Enzymes

@ref	Value	Activity	Ec
69574	acid phosphatase	-	3.1.3.2
69574	alkaline phosphatase	-	3.1.3.1
69574	alpha-chymotrypsin	-	3.4.21.1
69574	alpha-fucosidase	-	3.2.1.51
69574	alpha-galactosidase	-	3.2.1.22
69574	alpha-glucosidase	-	3.2.1.20
69574	alpha-mannosidase	-	3.2.1.24
69574	beta-galactosidase	-	3.2.1.23
69574	beta-glucosidase	-	3.2.1.21
69574	beta-glucuronidase	-	3.2.1.31
69574	catalase	+	1.11.1.6
69574	cystine arylamidase	-	3.4.11.3
69574	cytochrome oxidase	+	1.9.3.1
69574	esterase (C 4)	-
69574	esterase Lipase (C 8)	-
69574	leucine arylamidase	+	3.4.11.1
69574	lipase	-
69574	N-acetyl-beta-glucosaminidase	-	3.2.1.52
69574	naphthol-AS-BI-phosphohydrolase	+
69574	trypsin	-	3.4.21.4
69574	valine arylamidase	-

Fatty acid profile

Metadata FA analysis

@ref

69574

Fatty acid	Percentage
C18:1 w7c/C18:1 w6c	52.3
C16:0	24.6
C16:1 w7c/ C16:1 w6c	9.9
C10:0 3OH	4.7
C10:0	2.6
C12:0	2.6
C18:0	1.5

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Sediment from Lonar Lake		India	IND	Asia
69574	sediment sample collected from Lonar Lake, India.	Lonar Lake	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence KT633917 (>99% sequence identity) for Nitrincola tapanii subclade from Microbeatlas

Aquatic Samples	39
Soil Samples	5
Animal Samples	8
Plant Samples	0
Total Samples	52

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM836871v1 assembly for Nitrincola tapanii MEB193	contig	GCA_008368715	1708751.3	2890432115	1708751	74.2

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Nitrincola sp. MEB193 16S ribosomal RNA gene, partial sequence	KT633917	1481		1708751

GC content

@ref	GC-content (mol%)	Method
67770	50.79	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM836871v1 assembly for Nitrincola tapanii MEB193
NCBI: GCA_008368715

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	90.05	no
125439	motility	BacteriaNetⓘ	yes	72.72	no
125439	gram_stain	BacteriaNetⓘ	negative	95.03	no
125439	spore_formation	BacteriaNetⓘ	no	99.88	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nitrincola tapanii MEB193
NCBI: GCA_008368715.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.95	no
125438	anaerobic	anaerobicⓘ	no	87.24	no
125438	aerobic	aerobicⓘ	yes	66.53	no
125438	spore-forming	spore-formingⓘ	no	94.82	no
125438	thermophilic	thermophileⓘ	no	95.36	yes
125438	flagellated	motile2+ⓘ	yes	82.57	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nitrincola tapanii sp. nov., a novel alkaliphilic bacterium from An Indian Soda Lake.	Joshi A, Thite S, Dhotre D, Moorthy M, Joseph N, Ramana VV, Shouche Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003883	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#69574	Amaraja Joshi, Sonia Thite, Dhiraj Dhotre, Manju Moorthy, Neetha Joseph, V. Venkata Ramana and Yogesh Shouche: Nitrincola tapanii sp. nov., a novel alkaliphilic bacterium from An Indian Soda Lake. IJSEM 70: 2019 ( DOI 10.1099/ijsem.0.003883 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Nitrincola tapanii (MCC 2863, JCM 31570, KCTC 52390)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite tests

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_008368715

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media