Name: Methylophaga muralis JCM 31520
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164088

Type strain:

Species: Methylophaga muralis

Culture col. no.: JCM 31520, VKM B-3046

Strain history: N. V. Doronina; G. K. Skryabin Inst. of Biochem. & Physiol. of Microorg., RAS, Russia; Bur1.

NCBI tax ID(s): 291169 (species)

Special Collections

Other strains from Methylophaga muralis

Section

When using BacDive for research please cite our paper

Methylophaga muralis JCM 31520 is a mesophilic bacterium that was isolated from Brine water of soda lake Khilganta in South Transbaikalia.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Piscirickettsiaceae*
	Genus	*Methylophaga*
	Species	**Methylophaga muralis**
	Full Scientific Name (LPSN)	Methylophaga muralis corrig. Doronina et al. 2011

Synonym

Methylophaga murata

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %98
[Ref.: #125439]	Gram stain	negative Confidence in %92

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	29 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

obligate aerobe Confidence in %99.6

[Ref.: #125439]	Ability of spore formation	no Confidence in %96.4
[Ref.: #125438]	Ability of spore formation	no Confidence in %94.165

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Brine water of soda lake Khilganta in South Transbaikalia
[Ref.: #67770]	Geographic location (country and/or sea, region)	Buryat Republic
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Methylophaga muralis Bur 1	GCA_001720165	contig	GenBank ENA	291169 tax ID

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Methylophaga muralis Bur 1 NCBI: GCA_001720165.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	98	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	90.159	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	70.683	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	94.165	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	96.708	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	75.717	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Methylophaga muralis Bur 1 NCBI: GCA_001720165
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	96.4
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	58.5
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	92
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	99.6

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 31520, VKM B-3046

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Methylophaga muralis Bur 1, a Haloalkaliphilic (Non-Methane-Utilizing) Methylotroph Isolated from a Soda Lake.	Trotsenko YA, Shmareva MN, Doronina NV, Tarlachkov SV, Mustakhimov II, Vasilenko OV	Genome Announc	10.1128/genomeA.01227-16	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Methylophaga muralis Bur 1

Methylophaga muralis Bur 1

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