Rhodoferax koreensis (KCTC 52288, JCM 31441)

Name: Rhodoferax koreensis (KCTC 52288, JCM 31441)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164063

Type strain

Culture col. no. KCTC 52288 JCM 31441

NCBI tax ID(s) 1842727

Special Collections JCM KCTC

History JCM <-- D.-C. Yang and Y.-J. Kim; Ginseng Genet. Resour. Bank, Kyung Hee Univ., South Korea; DCY110.

Links

Rhodoferax koreensis JCM 31441 is a bacterium that was isolated from Sludge from Hwacheon.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 394368

JCM 31441

@ref 20215

Last LPSN update 2026-05-29 08:45:19

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Rhodoferax

Species Rhodoferax koreensis

Full scientific name Rhodoferax koreensis Kato et al. 2024

Synonyms (1)

"Rhodoferax koreense"

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.588

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	94.586

Spore formation

@ref	Spore formation	Confidence
125439		99.851

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Sludge from Hwacheon	Gangwon Province	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence KU519435 (>99% sequence identity) for Comamonadaceae from Microbeatlas

Aquatic Samples	93
Soil Samples	26
Animal Samples	5
Plant Samples	25
Total Samples	149

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
67770	ASM195569v1 assembly for Rhodoferax koreensis DCY-110	complete	GCA_001955695	2751185765	1842727	97.78

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Rhodoferax koreense 16S ribosomal RNA gene, partial sequence	KU519435	1467		1842727

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM195569v1 assembly for Rhodoferax koreensis DCY-110
NCBI: GCA_001955695

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	99.59	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.59	no
125439	motility	BacteriaNetⓘ	yes	87.45	no
125439	spore_formation	BacteriaNetⓘ	no	99.85	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	A small step to discover candidate biological control agents from preexisting bioresources by using novel nonribosomal peptide synthetases hidden in activated sludge metagenomes.	Tomita S, Kuroda K, Narihiro T.	PLoS One	10.1371/journal.pone.0294843	2023
Phylogeny	Rhodoferax koreense sp. nov, an obligately aerobic bacterium within the family Comamonadaceae, and emended description of the genus Rhodoferax.	Farh ME, Kim YJ, Singh P, Jung SY, Kang JP, Yang DC	J Microbiol	10.1007/s12275-017-7033-z	2017
Phylogeny	Rhodoferax lithotrophicus sp. nov., a neutrophilic iron-oxidizing and -reducing bacterium isolated from iron-rich freshwater sediments.	Kato S, Itoh T, Iino T, Sakamoto M, Ohkuma M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006439	2024

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Rhodoferax koreensis (KCTC 52288, JCM 31441)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001955695

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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