Name: Orenia metallireducens JCM 31419
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164055

Type strain:

Species: Orenia metallireducens

Culture col. no.: JCM 31419, ATCC BAA-2645

Strain history: B. W. Fouke; Univ. of Illinois Urbana-Champaign, USA; Z6.

NCBI tax ID(s): 1413210 (species)

Section

Orenia metallireducens JCM 31419 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from Briny groundwater extracted from a 2.02 km-deep borehole in the Illinois Basin.

Gram-negative
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Halanaerobiales*
	Family	*Halobacteroidaceae*
	Genus	*Orenia*
	Species	"Orenia metallireducens"
	Full Scientific Name (LPSN)	Orenia metallireducens Dong et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.193

[Ref.: #69480]	Motility	yes Confidence in %97.354

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %92.262

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %100

[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.601
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Briny groundwater extracted from a 2.02 km-deep borehole in the Illinois Basin
[Ref.: #67770]	Geographic location (country and/or sea, region)	IL
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KP898734 (>99% sequence identity) for Tepidibacillus from Microbeatlas

Aquatic Samples	136
Soil Samples	28
Animal Samples	6
Plant Samples
Total Samples	170

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Tepidibacillus decaturensis strain Z9 16S ribosomal RNA gene, partial sequence	KP898734	1493	ENA	1413211 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Orenia metallireducens Z6	GCA_001693735	scaffold	GenBank	1413210 tax ID

[Ref.: #67770]

GC-content

32.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Orenia metallireducens Z6 NCBI: GCA_001693735.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Orenia metallireducens Z6 NCBI: GCA_001693735.1
[Ref.: #69480]	flagellated	yes	77.543	no
[Ref.: #69480]	gram-positive	no	93.598	no
[Ref.: #69480]	anaerobic	yes	98.127	no
[Ref.: #69480]	halophile	no	76.3	no
[Ref.: #69480]	spore-forming	yes	64.204	no
[Ref.: #69480]	glucose-util	yes	85.909	no
[Ref.: #69480]	aerobic	no	97.865	no
[Ref.: #69480]	thermophile	no	88.962	yes
[Ref.: #69480]	motile	yes	90.739	no
[Ref.: #69480]	glucose-ferment	no	50	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 31419, ATCC BAA-2645

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Orenia metallireducens in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Orenia metallireducens Z6

Orenia metallireducens Z6

Change proposal

Change proposal