Faecalimonas umbilicata (DSM 103427, JCM 31370, TSAH33)

Name: Faecalimonas umbilicata (DSM 103427, JCM 31370, TSAH33)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164043

Type strain

Strain Designation TSAH33

Culture col. no. DSM 103427 JCM 31370 TSAH33

NCBI tax ID(s) 1912855

Special Collections DSMZ JCM

History M. Sakamoto; RIKEN BRC-JCM, Japan; TSAH33. <- M. Sakamoto, RIKEN BioResource Center, Tsukuba, Japan; TSAH33

Links

Faecalimonas umbilicata TSAH33 is a mesophilic prokaryote that was isolated from Feces of a man in the forties.

mesophilic 16S sequence

Name and taxonomic classification

SI-ID 396619

JCM 31370,DSM 103427

@ref 20215

Last LPSN update 2025-12-16 10:09:22

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Faecalimonas

Species Faecalimonas umbilicata

Full scientific name Faecalimonas umbilicata Sakamoto et al. 2017

BacDive ID	Other strains from **Faecalimonas umbilicata** (3)	Type strain
140268	F. umbilicata EGH7, DSM 103426, JCM 30896 (type strain)
160749	F. umbilicata 9/1/43 B FAA, DSM 24431
164157	F. umbilicata JCM 31933

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
68996	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)		Medium recipe at MediaDive	Name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic
68996	positive	growth	37	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Feces of a man in the forties
68996	Feces of man	Tsukuba, Ibaraki	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC192832 (>99% sequence identity) for Faecalimonas umbilicata subclade from Microbeatlas

Aquatic Samples	856
Soil Samples	369
Animal Samples	51940
Plant Samples	294
Total Samples	53459

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
68996	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Faecalimonas umbilicata gene for 16S ribosomal RNA, partial sequence, strain: TSAH33	LC192832	1492		1912855

GC content

@ref	GC-content (mol%)	Method
67770	45.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Faecalimonas umbilicata gen. nov., sp. nov., isolated from human faeces, and reclassification of Eubacterium contortum, Eubacterium fissicatena and Clostridium oroticum as Faecalicatena contorta gen. nov., comb. nov., Faecalicatena fissicatena comb. nov. and Faecalicatena orotica comb. nov.	Sakamoto M, Iino T, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001790	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68996	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103427
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Faecalimonas umbilicata (DSM 103427, JCM 31370, TSAH33)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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