Name: Faecalimonas umbilicata TSAH33
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164043

Type strain:

Species: Faecalimonas umbilicata

Strain Designation: TSAH33

Culture col. no.: JCM 31370, DSM 103427

Strain history: <- M. Sakamoto, RIKEN BioResource Center, Tsukuba, Japan; TSAH33

NCBI tax ID(s): 1912855 (species)

SI-ID 396619

DSM 103427

Special Collections

DSMZ
JCM

Other strains from Faecalimonas umbilicata

Section

Faecalimonas umbilicata TSAH33 is a bacterium that was isolated from Feces of a man in the forties.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Faecalimonas*
	Species	**Faecalimonas umbilicata**
	Full Scientific Name (LPSN)	Faecalimonas umbilicata Sakamoto et al. 2017

Information on culture and growth conditions Culture and growth conditions

[Ref.: #68996]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #68996]

Culture medium growth

[Ref.: #68996]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C
[Ref.: #68996]			growth	37 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Feces of a man in the forties

[Ref.: #68996]	Sample type/isolated from	Feces of man
[Ref.: #68996]	Geographic location (country and/or sea, region)	Tsukuba, Ibaraki
[Ref.: #68996]	Country	Japan
[Ref.: #68996]	Country ISO 3 Code	JPN
[Ref.: #68996]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC192832 (>99% sequence identity) for Faecalimonas umbilicata subclade from Microbeatlas

Aquatic Samples	856
Soil Samples	369
Animal Samples	51940
Plant Samples	294
Total Samples	53459

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #68996]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Faecalimonas umbilicata gene for 16S ribosomal RNA, partial sequence, strain: TSAH33	LC192832	1492	GenBank ENA	1912855 tax ID

[Ref.: #67770]

GC-content

45.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 31370, DSM 103427

[Ref.: #114150]

SI-ID 396619

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Faecalimonas umbilicata gen. nov., sp. nov., isolated from human faeces, and reclassification of Eubacterium contortum, Eubacterium fissicatena and Clostridium oroticum as Faecalicatena contorta gen. nov., comb. nov., Faecalicatena fissicatena comb. nov. and Faecalicatena orotica comb. nov.	Sakamoto M, Iino T, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001790	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68996

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103427

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#114150

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396619.1 )

* These data were automatically processed and therefore are not curated

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