Name: Roseibium callyspongiae JCM 31309
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164010

Type strain:

Species: Roseibium callyspongiae

Culture col. no.: JCM 31309, KCTC 42849

Strain history: M.-S. Heo; Jeju Natl. Univ., South Korea; CE80.

Section

Roseibium callyspongiae JCM 31309 is a mesophilic bacterium that was isolated from Marine sponge Callyspongia elegans in Jeju Island.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Stappiaceae*
	Genus	*Roseibium*
	Species	"Roseibium callyspongiae"
	Full Scientific Name (LPSN)	Roseibium callyspongiae Liu et al. 2021

Synonym

"Labrenzia callyspongiae"

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Marine sponge Callyspongia elegans in Jeju Island
[Ref.: #67770]	Host species	Callyspongia elegans
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Labrenzia sp. CE80 16S ribosomal RNA gene, partial sequence	KT596062	1478	ENA	1788986 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Labrenzia sp. CE80	GCA_009650605	scaffold	GenBank	1788986 tax ID

[Ref.: #67770]

GC-content

55.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Labrenzia sp. CE80 CE80 NCBI: GCA_009650605.1
[Ref.: #69480]	motile	yes	91.257	no
[Ref.: #69480]	flagellated	no	54.276	no
[Ref.: #69480]	gram-positive	no	98.03	no
[Ref.: #69480]	anaerobic	no	98.259	no
[Ref.: #69480]	aerobic	yes	92.162	no
[Ref.: #69480]	halophile	yes	55.652	no
[Ref.: #69480]	spore-forming	no	95.046	no
[Ref.: #69480]	glucose-util	yes	92.244	no
[Ref.: #69480]	thermophile	no	95.509	yes
[Ref.: #69480]	glucose-ferment	no	88.277	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 31309, KCTC 42849

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Labrenzia sp. CE80 CE80

Change proposal

Change proposal