Name: Paenibacillus ihbetae JCM 31132
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 163955

Type strain:

Species: Paenibacillus ihbetae

Culture col. no.: JCM 31132, KACC 19073, MCC 2794, MTCC 12458

Strain history: A. Gulati; CSIR-Inst. of Himalayan Bioresour. Technol., India; IHBB 9951.

NCBI tax ID(s): 1870820 (species)

Special Collections

Other strains from Paenibacillus ihbetae

Section

When using BacDive for research please cite our paper

Paenibacillus ihbetae JCM 31132 is a spore-forming, mesophilic bacterium that was isolated from Sediment of Suraj Tal Lake in Lahaul valley.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus ihbetae**
	Full Scientific Name (LPSN)	Paenibacillus ihbetae Kiran et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #125439]	Motility	yes Confidence in %92.6

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125438]	Ability of spore formation	yes Confidence in %93.336
[Ref.: #125439]	Ability of spore formation	yes Confidence in %97.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Sediment of Suraj Tal Lake in Lahaul valley
[Ref.: #67770]	Geographic location (country and/or sea, region)	Himachal Pradesh
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KP745128 (>99% sequence identity) for Paenibacillus ihbetae from Microbeatlas

Aquatic Samples	111
Soil Samples	443
Animal Samples	206
Plant Samples	393
Total Samples	1153

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus sp. IHB B 9951 16S ribosomal RNA gene, partial sequence	KP745128	1565	GenBank ENA	1684882 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus ihbetae IHBB 9951	GCA_001996445	contig	GenBank ENA	1870820 tax ID
[Ref.: #66792]	Paenibacillus sp. IHBB 9951 strain IHBB 9951	1870821.3	wgs	PATRIC	1870820 tax ID	*

[Ref.: #67770]

GC-content

52.2 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus sp. IHBB 9951 strain IHBB 9951 PATRIC: 1870821.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	61.276	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	96.161	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	93.336	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	60.249	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	92.728	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	87.043	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paenibacillus ihbetae IHBB 9951 NCBI: GCA_001996445
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	97.2
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	92.6
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	variable	83.2
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	facultative anaerobe	88.3

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 31132, KACC 19073, MCC 2794, MTCC 12458

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus ihbetae sp. nov., a cold-adapted antimicrobial producing bacterium isolated from high altitude Suraj Tal Lake in the Indian trans-Himalayas.	Kiran S, Swarnkar MK, Mayilraj S, Tewari R, Gulati A	Syst Appl Microbiol	10.1016/j.syapm.2017.07.005	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Paenibacillus sp. IHBB 9951 strain IHBB 9951

Paenibacillus ihbetae IHBB 9951

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