Name: Halorussus litoreus JCM 31109
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163952

Type strain:

Species: Halorussus litoreus

Culture col. no.: JCM 31109, CGMCC 1.15333

Strain history: H.-L. Cui; Sch. of Food & Biol. Eng., Jiangsu Univ., China; HD8-51.

NCBI tax ID(s): 1710536 (species)

Section

Halorussus litoreus JCM 31109 is a mesophilic, Gram-negative archaeon that was isolated from Salted brown alga Laminaria produced at Dalian.

Gram-negative
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Halobacteriaceae*
	Genus	*Halorussus*
	Species	**Halorussus litoreus**
	Full Scientific Name (LPSN)	Halorussus litoreus Han et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.97

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.991
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Salted brown alga Laminaria produced at Dalian
[Ref.: #67770]	Host species	Laminaria
[Ref.: #67770]	Geographic location (country and/or sea, region)	Liaoning Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KT261641 (>99% sequence identity) for Halorussus litoreus subclade from Microbeatlas

Aquatic Samples	144
Soil Samples	65
Animal Samples	53
Plant Samples	5
Total Samples	267

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halorussus litoreus strain HD8-51 16S ribosomal RNA gene, partial sequence	KT261641	1472	ENA	1710536 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halorussus litoreus HD8-51	GCA_003382685	scaffold	GenBank	1710536 tax ID

[Ref.: #67770]

GC-content

65.9 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halorussus litoreus HD8-51 NCBI: GCA_003382685.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halorussus litoreus HD8-51 NCBI: GCA_003382685.1
[Ref.: #69480]	motile	no	62.773	no
[Ref.: #69480]	flagellated	no	94.532	no
[Ref.: #69480]	gram-positive	no	97.424	no
[Ref.: #69480]	anaerobic	no	96.742	no
[Ref.: #69480]	aerobic	yes	85.087	no
[Ref.: #69480]	halophile	yes	86.186	no
[Ref.: #69480]	spore-forming	no	95.666	no
[Ref.: #69480]	glucose-util	yes	84.409	no
[Ref.: #69480]	thermophile	no	80.009	yes
[Ref.: #69480]	glucose-ferment	no	89.128	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 31109, CGMCC 1.15333

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halorussus litoreus sp. nov., isolated from the salted brown alga Laminaria.	Han D, Zhu L, Cui HL	Int J Syst Evol Microbiol	10.1099/ijsem.0.003233	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Halorussus litoreus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Halorussus litoreus HD8-51

Halorussus litoreus HD8-51

Change proposal

Change proposal