Name: Halosimplex salinum JCM 31108
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163951

Type strain:

Species: Halosimplex salinum

Culture col. no.: JCM 31108, CGMCC 1.15329

Strain history: H.-L. Cui; Jiangsu Univ., China; YPL4.

NCBI tax ID(s): 1710538 (species)

Section

Halosimplex salinum JCM 31108 is a mesophilic archaeon that was isolated from Yipinglang salt mine in Yunnan Province.

mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Haloarculaceae*
	Genus	*Halosimplex*
	Species	**Halosimplex salinum**
	Full Scientific Name (LPSN)	Halosimplex salinum Yang et al. 2021

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8, MK-8(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Yipinglang salt mine in Yunnan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halosimplex sp. YPL4 16S ribosomal RNA gene, partial sequence	KT261633	1473	ENA	1710538 tax ID
[Ref.: #67770]	Halosimplex sp. YPL4 16S ribosomal RNA gene, partial sequence	KT261634	1474	ENA	1710538 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halosimplex salinum YPL4	GCA_003730195	contig	GenBank	1710538 tax ID

[Ref.: #67770]

GC-content

66.8 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halosimplex salinum YPL4 NCBI: GCA_003730195.1
[Ref.: #69480]	motile	no	76.449	no
[Ref.: #69480]	flagellated	no	96.245	no
[Ref.: #69480]	gram-positive	no	97.119	no
[Ref.: #69480]	anaerobic	no	95.862	no
[Ref.: #69480]	aerobic	yes	86.816	no
[Ref.: #69480]	halophile	yes	78.827	no
[Ref.: #69480]	spore-forming	no	93.535	no
[Ref.: #69480]	glucose-util	yes	90.114	no
[Ref.: #69480]	thermophile	no	86.787	yes
[Ref.: #69480]	glucose-ferment	no	84.505	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 31108, CGMCC 1.15329

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halosimplex halophilum sp. nov. and Halosimplex salinum sp. nov., isolated from saline soil and a salt mine.	Yang XY, Yin XM, Hou J, Zhu L, Cui HL	Int J Syst Evol Microbiol	10.1099/ijsem.0.004775	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Halosimplex salinum YPL4

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