Alkalicella caledoniensis (DSM 100588, JCM 30958, LB2)

Name: Alkalicella caledoniensis (DSM 100588, JCM 30958, LB2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 163918

Type strain

Strain Designation LB2

Culture col. no. DSM 100588 JCM 30958 LB2

NCBI tax ID(s) 2731377

Special Collections DSMZ JCM

Links

Alkalicella caledoniensis LB2 is a mesophilic prokaryote that was isolated from Sediment slurry of 'La Crouen' thermal spring near Canala.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 406998

JCM 30958,DSM 100588

@ref 20215

Last LPSN update 2025-12-16 10:09:20

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Proteinivoracaceae

Genus Alkalicella

Species Alkalicella caledoniensis

Full scientific name Alkalicella caledoniensis Quéméneur et al. 2021

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
125141	PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)		Medium recipe at MediaDive	Name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic
125141	positive	growth	37

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Sediment slurry of 'La Crouen' thermal spring near Canala	New Caledonia	French Overseas	FRA
125141	La Crouen spring	New Caledonia	France	FRA	Europe

Taxonmaps

69479

Global distribution of 16S sequence KR349724 (>99% sequence identity) for Anaerobranca from Microbeatlas

Aquatic Samples	86
Soil Samples	54
Animal Samples	22
Plant Samples	3
Total Samples	165

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1446701v1 assembly for Alkalicella caledoniensis LB2	complete	GCA_014467015	2731377.3	2982164802	2731377	95.87

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Alkalicella caledoniensis strain LB2 16S ribosomal RNA gene, partial sequence	KR349724	1374		2731377

GC content

@ref	GC-content (mol%)	Method
67770	36.2	genome sequence analysis
125141	36.2	sequence analysis

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Importance rapid initial decline in oxidation-reduction potential, followed by an increase in extracellular electron transport activities, for the rapid onset of indigo reduction.	Farjana N, Furukawa H, Igarashi K, Kato S, Yumoto I.	J Biosci Bioeng	10.1016/j.jbiosc.2025.08.008	2025
	Extremophile hotspots linked to containerized industrial waste dumping in a deep-sea basin.	Gutleben J, Podell S, Mizell K, Sweeney D, Neira C, Levin LA, Jensen PR.	PNAS Nexus	10.1093/pnasnexus/pgaf260	2025
	Environmental factors contributing to the convergence of bacterial community structure during indigo reduction.	Farjana N, Tu Z, Furukawa H, Yumoto I.	Front Microbiol	10.3389/fmicb.2023.1097595	2023
	Effect of Fermentation Scale on Microbiota Dynamics and Metabolic Functions for Indigo Reduction.	Farjana N, Furukawa H, Sumi H, Yumoto I.	Int J Mol Sci	10.3390/ijms241914696	2023
	Indigofera tinctoria L. leaf powder promotes initiation of indigo reduction by inducing of rapid transition of the microbial community.	Lopes HFS, Tu Z, Sumi H, Yumoto I.	Front Microbiol	10.3389/fmicb.2022.957809	2022
Genetics	Insights into the physiological and genomic characterization of three bacterial isolates from a highly alkaline, terrestrial serpentinizing system.	Thompson J, Barr C, Babcock-Adams L, Bird L, La Cava E, Garber A, Hongoh Y, Liu M, Nealson KH, Okamoto A, Repeta D, Suzuki S, Tacto C, Tashjian M, Merino N.	Front Microbiol	10.3389/fmicb.2023.1179857	2023
Phylogeny	Alkalicella caledoniensis gen. nov., sp. nov., a novel alkaliphilic anaerobic bacterium isolated from 'La Crouen' alkaline thermal spring, New Caledonia.	Quemeneur M, Erauso G, Bartoli M, Vandecasteele C, Wils L, Gil L, Monnin C, Pelletier B, Postec A	Int J Syst Evol Microbiol	10.1099/ijsem.0.004810	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125141	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100588
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alkalicella caledoniensis (DSM 100588, JCM 30958, LB2)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014467015

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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