Name: Photobacterium salinisoli JCM 30852
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163887

Type strain:

Species: Photobacterium salinisoli

Culture col. no.: JCM 30852, ACCC 19961, LAM 9072

Strain history: Z. Ruan; Inst. of Agric. Resour. & Reg. Plann., CAAS, China; LAM9072.

NCBI tax ID(s): 1616783 (species)

Section

Photobacterium salinisoli JCM 30852 is an aerobe, mesophilic, Gram-negative bacterium that forms irregular colonies and was isolated from Sulfonylurea herbicide degrading consortium enriched with saline soil collected from Lingxian County.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Photobacterium*
	Species	**Photobacterium salinisoli**
	Full Scientific Name (LPSN)	Photobacterium salinisoli Li et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #68244]	Gram stain	negative

[Ref.: #68244]	Cell length	1-2.5 µm

[Ref.: #68244]	Cell width	0.5-0.8 µm

[Ref.: #68244]	Cell shape	rod-shaped

[Ref.: #68244]	Motility	yes

[Ref.: #68244]	Colony color	light brown
[Ref.: #68244]	Colony shape	irregular
[Ref.: #68244]	Incubation period	3 days
[Ref.: #68244]	Cultivation medium used	Marine agar (MA)

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	35 °C
[Ref.: #68244]	growth	10-40 °C
[Ref.: #68244]	optimum	35 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #68244]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68244]			optimum	7
[Ref.: #68244]			growth	6-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68244]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68244]		NaCl		growth	0-9	%(w/v)
[Ref.: #68244]		NaCl		optimum	2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68244]	adipate ChEBI	-	assimilation
[Ref.: #68244]	amygdalin ChEBI	-	builds acid from
[Ref.: #68244]	arabinose ChEBI	-	assimilation
[Ref.: #68244]	arbutin ChEBI	-	builds acid from
[Ref.: #68244]	casein	-	hydrolysis
[Ref.: #68244]	cellobiose ChEBI	-	builds acid from
[Ref.: #68244]	citrate ChEBI	+	assimilation
[Ref.: #68244]	D-arabinose ChEBI	-	builds acid from
[Ref.: #68244]	D-arabitol ChEBI	-	builds acid from
[Ref.: #68244]	D-fructose ChEBI	+	builds acid from
[Ref.: #68244]	D-fucose ChEBI	-	builds acid from
[Ref.: #68244]	D-galactose ChEBI	-	builds acid from
[Ref.: #68244]	D-glucose ChEBI	+	fermentation
[Ref.: #68244]	D-glucose ChEBI	+	builds acid from
[Ref.: #68244]	D-lyxose ChEBI	-	builds acid from
[Ref.: #68244]	D-mannitol ChEBI	+	builds acid from
[Ref.: #68244]	D-mannose ChEBI	-	builds acid from
[Ref.: #68244]	D-ribose ChEBI	-	builds acid from
[Ref.: #68244]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #68244]	D-tagatose ChEBI	-	builds acid from
[Ref.: #68244]	D-xylose ChEBI	+	builds acid from
[Ref.: #68244]	erythritol ChEBI	-	builds acid from
[Ref.: #68244]	esculin ChEBI	-	hydrolysis
[Ref.: #68244]	esculin ferric citrate	-	builds acid from
[Ref.: #68244]	galactitol ChEBI	-	builds acid from
[Ref.: #68244]	gelatin ChEBI	-	hydrolysis
[Ref.: #68244]	gentiobiose ChEBI	-	builds acid from
[Ref.: #68244]	gluconate ChEBI	+	assimilation
[Ref.: #68244]	glucose ChEBI	+	assimilation
[Ref.: #68244]	glycerol ChEBI	-	builds acid from
[Ref.: #68244]	glycogen ChEBI	-	builds acid from
[Ref.: #68244]	hexanoate ChEBI	-	assimilation
[Ref.: #68244]	inulin ChEBI	-	builds acid from
[Ref.: #68244]	L-arabinose ChEBI	-	builds acid from
[Ref.: #68244]	L-arabitol ChEBI	-	builds acid from
[Ref.: #68244]	L-fucose ChEBI	-	builds acid from
[Ref.: #68244]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #68244]	L-sorbose ChEBI	-	builds acid from
[Ref.: #68244]	L-xylose ChEBI	-	builds acid from
[Ref.: #68244]	lactose ChEBI	-	builds acid from
[Ref.: #68244]	malate ChEBI	+	assimilation
[Ref.: #68244]	maltose ChEBI	+	assimilation
[Ref.: #68244]	maltose ChEBI	+	builds acid from
[Ref.: #68244]	mannitol ChEBI	+	assimilation
[Ref.: #68244]	mannose ChEBI	-	assimilation
[Ref.: #68244]	melezitose ChEBI	-	builds acid from
[Ref.: #68244]	melibiose ChEBI	-	builds acid from
[Ref.: #68244]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #68244]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #68244]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #68244]	myo-inositol ChEBI	-	builds acid from
[Ref.: #68244]	N-acetyl-D-glucosamine ChEBI	+	assimilation
[Ref.: #68244]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #68244]	nitrate ChEBI	-	reduction
[Ref.: #68244]	phenylacetate ChEBI	-	assimilation
[Ref.: #68244]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #68244]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #68244]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #68244]	raffinose ChEBI	-	builds acid from
[Ref.: #68244]	ribitol ChEBI	-	builds acid from
[Ref.: #68244]	salicin ChEBI	-	builds acid from
[Ref.: #68244]	starch ChEBI	+	hydrolysis
[Ref.: #68244]	starch ChEBI	+/-	builds acid from
[Ref.: #68244]	sucrose ChEBI	+	builds acid from
[Ref.: #68244]	trehalose ChEBI	+	builds acid from
[Ref.: #68244]	turanose ChEBI	-	builds acid from
[Ref.: #68244]	tween 20 ChEBI	+	hydrolysis
[Ref.: #68244]	tween 60 ChEBI	+	hydrolysis
[Ref.: #68244]	tween 80 ChEBI	+	hydrolysis
[Ref.: #68244]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68244]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68244]	acid phosphatase	+	3.1.3.2
[Ref.: #68244]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68244]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68244]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68244]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68244]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68244]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68244]	beta-galactosidase	-	3.2.1.23
[Ref.: #68244]	beta-glucosidase	-	3.2.1.21
[Ref.: #68244]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68244]	catalase	+	1.11.1.6
[Ref.: #68244]	chymotrypsin	-	3.4.4.5
[Ref.: #68244]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #68244]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68244]	esterase (C 4)	+
[Ref.: #68244]	esterase Lipase (C 8)	+
[Ref.: #68244]	gelatinase	+
[Ref.: #68244]	leucine arylamidase	+	3.4.11.1
[Ref.: #68244]	lipase (C 14)	+/-
[Ref.: #68244]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #68244]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #68244]	trypsin	-	3.4.21.4
[Ref.: #68244]	urease	-	3.5.1.5
[Ref.: #68244]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68244]

Fatty acid	Percentage
C16:1 w7c/C16:1 w6c	36.1
C16:0	19.4
C18:1 w7c/C18:1 w6c	13.2
C12:0	8.1
C12:0 3OH	5.7
C14:0 3OH/iso-C16:1 I	5.3
C17:0	2.5
C17:1 w8c	1.7
C15:0 iso	1.7
C14:0	1
C17:0 iso	0.9
C15:1 iso H / C13:0 3OH	0.7
C15:1 w8c	0.7
C11:0	0.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Sulfonylurea herbicide degrading consortium enriched with saline soil collected from Lingxian County
[Ref.: #67770]	Geographic location (country and/or sea, region)	Shandong Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #68244]	Sample type/isolated from	sulfonylurea herbicide-degrading consortium enriched with saline soil
[Ref.: #68244]	Geographic location (country and/or sea, region)	Lingxian County, Shandong Province
[Ref.: #68244]	Country	China
[Ref.: #68244]	Country ISO 3 Code	CHN
[Ref.: #68244]	Continent	Asia
[Ref.: #68244]	Geographic location	37.5667°/116.8170°
[Ref.: #68244]	Enrichment culture	marine agar 2216E
[Ref.: #68244]	Enrichment culture duration	2 days
[Ref.: #68244]	Enrichment culture temperature	30 ̊C
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KP054474 (>99% sequence identity) for Photobacterium galatheae from Microbeatlas

Aquatic Samples	167
Soil Samples	38
Animal Samples	153
Plant Samples	1
Total Samples	359

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68244]	Photobacterium sp. LAM9072 16S ribosomal RNA gene, partial sequence	KP054474	1457	ENA	1616783 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Photobacterium salinisoli LAM9072	GCA_003614885	contig	GenBank	1616783 tax ID

[Ref.: #68244]

GC-content

50.2 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Photobacterium salinisoli LAM9072 NCBI: GCA_003614885.1
[Ref.: #69480]	flagellated	yes	89.405	no
[Ref.: #69480]	gram-positive	no	98.803	yes
[Ref.: #69480]	anaerobic	no	97.728	yes
[Ref.: #69480]	aerobic	yes	85.446	no
[Ref.: #69480]	halophile	no	67.733	no
[Ref.: #69480]	spore-forming	no	95.32	no
[Ref.: #69480]	glucose-util	yes	91.531	yes
[Ref.: #69480]	thermophile	no	99.73	yes
[Ref.: #69480]	motile	yes	91.934	yes
[Ref.: #69480]	glucose-ferment	yes	86.472	yes

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30852, ACCC 19961, LAM 9072

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Photobacterium arenosum sp. nov., isolated from marine sediment sand.	Weerawongwiwat V, Yoon S, Kim JH, Yoon JH, Lee JS, Sukhoom A, Kim W	Int J Syst Evol Microbiol	10.1099/ijsem.0.005034	2021	*
Phylogeny	Photobacterium salinisoli sp. nov., isolated from a sulfonylurea herbicide-degrading consortium enriched with saline soil.	Li M, Kong D, Wang Y, Ma Q, Han X, Zhou Y, Jiang X, Zhang Y, Ruan Z, Zhang Q	Int J Syst Evol Microbiol	10.1099/ijsem.0.003705	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68244

Miaomiao Li, Delong Kong, Yani Wang, Qingyun Ma, Xiaoyan Han, Yiqing Zhou, Xu jiang, Yuqin Zhang, Zhiyong Ruan and Qinghua Zhang: Photobacterium salinisoli sp. nov., isolated from a sulfonylurea herbicide-degrading consortium enriched with saline soil. IJSEM 69: 3910 - 3916 2019 ( DOI 10.1099/ijsem.0.003705 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Photobacterium salinisoli LAM9072

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