Name: Natronorubrum halophilum JCM 30845
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163884

Type strain:

Species: Natronorubrum halophilum

Culture col. no.: JCM 30845, CGMCC 1.15233

Strain history: H.-L. Cui; Jiangsu Univ., China; SHR37.

NCBI tax ID(s): 1702106 (species)

Section

Natronorubrum halophilum JCM 30845 is a mesophilic archaeon that was isolated from Dabancheng Salt Lake.

mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Natrialbales*
	Family	*Natrialbaceae*
	Genus	*Natronorubrum*
	Species	**Natronorubrum halophilum**
	Full Scientific Name (LPSN)	Natronorubrum halophilum Tao et al. 2020

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Dabancheng Salt Lake
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KR012974 (>99% sequence identity) for Natronorubrum from Microbeatlas

Aquatic Samples
Soil Samples	1
Animal Samples
Plant Samples
Total Samples	1

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halobacteriaceae archaeon SHR37 16S ribosomal RNA gene, partial sequence	KR012974	1475	ENA	1702106 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Natronorubrum halophilum SHR37	GCA_003670115	contig	GenBank	1702106 tax ID

[Ref.: #67770]

GC-content

62.9 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Natronorubrum halophilum SHR37 NCBI: GCA_003670115.1
[Ref.: #69480]	motile	no	78.933	no
[Ref.: #69480]	flagellated	no	96.078	no
[Ref.: #69480]	gram-positive	no	95.435	no
[Ref.: #69480]	anaerobic	no	98.086	no
[Ref.: #69480]	aerobic	yes	92.992	no
[Ref.: #69480]	halophile	yes	88.848	no
[Ref.: #69480]	spore-forming	no	92.976	no
[Ref.: #69480]	glucose-util	yes	91.707	no
[Ref.: #69480]	thermophile	no	90.48	no
[Ref.: #69480]	glucose-ferment	no	83.377	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30845, CGMCC 1.15233

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Natronorubrum halophilum sp. nov. isolated from two inland salt lakes.	Tao CQ, Ding Y, Zhao YJ, Cui HL	J Microbiol	10.1007/s12275-020-9514-8	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Natronorubrum halophilum SHR37

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