Halosimplex halophilum (CGMCC 1.15190, JCM 30840)

Name: Halosimplex halophilum (CGMCC 1.15190, JCM 30840)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 163883

Type strain

Culture col. no. CGMCC 1.15190 JCM 30840

NCBI tax ID(s) 2559572

Special Collections JCM

History JCM <-- H.-L. Cui; Jiangsu Univ., China; TH32.

Links

Halosimplex halophilum JCM 30840 is an archaeon that was isolated from Saline soil from Tarim Basin.

genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 393931

JCM 30840

@ref 20215

Last LPSN update 2026-05-29 08:45:16

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloarculaceae

Genus Halosimplex

Species Halosimplex halophilum

Full scientific name Halosimplex halophilum Yang et al. 2021

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	92.938

Spore formation

@ref	Spore formation	Confidence
125439		97.18

Observation

67770

Observationquinones: MK-8, MK-8(H₄)

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Saline soil from Tarim Basin	China	CHN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM469812v1 assembly for Halosimplex halophilum TH32	scaffold	GCA_004698125	2559572.3	2883611124	2559572	76.01

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Halobacteriaceae archaeon TH32 16S ribosomal RNA gene, partial sequence	KM496562	1472		1553002
67770	Halosimplex halophilum strain TH32 16S ribosomal RNA gene, partial sequence	MT860299	1472		2559572

GC content

@ref	GC-content (mol%)	Method
67770	70	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM469812v1 assembly for Halosimplex halophilum TH32
NCBI: GCA_004698125

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	92.94	no
125439	motility	BacteriaNetⓘ	yes	48.18	no
125439	gram_stain	BacteriaNetⓘ	negative	60.83	no
125439	spore_formation	BacteriaNetⓘ	no	97.18	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Halosimplex halophilum TH32
NCBI: GCA_004698125.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	78.06	no
125438	anaerobic	anaerobicⓘ	no	78.31	no
125438	aerobic	aerobicⓘ	yes	79.17	no
125438	spore-forming	spore-formingⓘ	no	81.84	no
125438	thermophilic	thermophileⓘ	no	74.95	yes
125438	flagellated	motile2+ⓘ	no	86.53	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halosimplex halophilum sp. nov. and Halosimplex salinum sp. nov., isolated from saline soil and a salt mine.	Yang XY, Yin XM, Hou J, Zhu L, Cui HL	Int J Syst Evol Microbiol	10.1099/ijsem.0.004775	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halosimplex halophilum (CGMCC 1.15190, JCM 30840)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_004698125

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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