Name: Methylobacterium indicum JCM 30761
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163873

Type strain:

Species: Methylobacterium indicum

Culture col. no.: JCM 30761, MTCC 12298

Strain history: P. B. Patil; CSIR-IMTECH, India; SE2.11.

NCBI tax ID(s): 1775910 (species)

Other strains from Methylobacterium indicum

M. indicum JCM 30762, MTCC 12299

Section

Methylobacterium indicum JCM 30761 is a mesophilic bacterium that was isolated from Surface sterilized rice seeds.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Methylobacteriaceae*
	Genus	*Methylobacterium*
	Species	"Methylobacterium indicum"
	Full Scientific Name (LPSN)	Methylobacterium indicum Chaudhry et al. 2016

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Surface sterilized rice seeds
[Ref.: #67770]	Geographic location (country and/or sea, region)	Fazilka, Punjab
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KP272100 (>99% sequence identity) for Methylobacterium from Microbeatlas

Aquatic Samples	1956
Soil Samples	1060
Animal Samples	4713
Plant Samples	1630
Total Samples	9359

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Methylobacterium indicum strain SE2.11 16S ribosomal RNA gene, partial sequence	KP272100	1450	ENA	1775910 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Methylobacterium indicum SE2.11	GCA_001043895	contig	GenBank	1775910 tax ID

[Ref.: #67770]

GC-content

69.9 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methylobacterium indicum SE2.11 NCBI: GCA_001043895.1
[Ref.: #69480]	motile	yes	89.874	no
[Ref.: #69480]	flagellated	no	71.377	no
[Ref.: #69480]	gram-positive	no	97.86	no
[Ref.: #69480]	anaerobic	no	98.463	no
[Ref.: #69480]	aerobic	yes	94.693	no
[Ref.: #69480]	halophile	no	90.547	no
[Ref.: #69480]	spore-forming	no	92.823	no
[Ref.: #69480]	thermophile	no	98.918	yes
[Ref.: #69480]	glucose-util	yes	91.682	no
[Ref.: #69480]	glucose-ferment	no	88.064	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30761, MTCC 12298

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methylobacterium indicum sp. nov., a facultative methylotrophic bacterium isolated from rice seed.	Chaudhry V, Baindara P, Pal VK, Chawla N, Patil PB, Korpole S	Syst Appl Microbiol	10.1016/j.syapm.2015.12.006	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Methylobacterium indicum SE2.11

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