Name: Roseovarius faecimaris MME-070
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 163871

Type strain:

Species: Roseovarius faecimaris

Strain Designation: MME-070

Culture col. no.: JCM 30757, KCCM 43142

Strain history: M.-J. Seo; Incheon Natl. Univ., South Korea; MME-070.

NCBI tax ID(s): 2494550 (species)

Special Collections

Section

Roseovarius faecimaris MME-070 is an obligate aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from Tidal flat near Muui-do.

colony-forming
Gram-negative
rod-shaped
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Roseovarius*
	Species	**Roseovarius faecimaris**
	Full Scientific Name (LPSN)	Roseovarius faecimaris Cha et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67913]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.333

[Ref.: #67913]	Cell length	8.1-10.9 µm

[Ref.: #67913]	Cell width	2.5-3.4 µm

[Ref.: #67913]	Cell shape	rod-shaped

[Ref.: #67913]	Motility	no

[Ref.: #67913]	Colony size	1 mm
[Ref.: #67913]	Colony color	cream-coloured
[Ref.: #67913]	Colony shape	circular
[Ref.: #67913]	Incubation period	3 days
[Ref.: #67913]	Cultivation medium used	Marine agar (MA)

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	30 °C
[Ref.: #67913]	growth	20-40 °C
[Ref.: #67913]	optimum	25-30 °C

	pH	Kind of pH		pH
[Ref.: #67913]			optimum	8
[Ref.: #67913]			growth	7.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67913]

Oxygen tolerance

obligate aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %92.688
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67913]		NaCl		growth	1.0-5.0	%(w/v)
[Ref.: #67913]		NaCl		optimum	2.0-3.0	%(w/v)

[Ref.: #67770]	Observation	quinones: Q-10
[Ref.: #67913]	Observation	The sole respiratory quinone is Q-10
[Ref.: #67913]	Observation	The polar lipids are PG, PC, DPG, an unidentified aminolipid and some unidentified lipids

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67913]	benzoate ChEBI	-	assimilation
[Ref.: #67913]	casein	-	hydrolysis
[Ref.: #67913]	cellobiose ChEBI	-	assimilation
[Ref.: #67913]	citrate ChEBI	-	assimilation
[Ref.: #67913]	D-fructose ChEBI	-	assimilation
[Ref.: #67913]	D-galactose ChEBI	-	assimilation
[Ref.: #67913]	D-glucose ChEBI	-	assimilation
[Ref.: #67913]	D-mannitol ChEBI	-	assimilation
[Ref.: #67913]	D-mannose ChEBI	-	assimilation
[Ref.: #67913]	D-ribose ChEBI	-	assimilation
[Ref.: #67913]	D-sorbitol ChEBI	-	assimilation
[Ref.: #67913]	D-xylose ChEBI	-	assimilation
[Ref.: #67913]	gelatin ChEBI	+	hydrolysis
[Ref.: #67913]	glucose ChEBI	-	fermentation
[Ref.: #67913]	glycerol ChEBI	-	assimilation
[Ref.: #67913]	L-arabinose ChEBI	-	assimilation
[Ref.: #67913]	L-glutamate ChEBI	+	carbon source
[Ref.: #67913]	L-ornithine ChEBI	-	assimilation
[Ref.: #67913]	L-rhamnose ChEBI	-	assimilation
[Ref.: #67913]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #67913]	lactose ChEBI	-	assimilation
[Ref.: #67913]	malate ChEBI	+	carbon source
[Ref.: #67913]	maltose ChEBI	-	assimilation
[Ref.: #67913]	melibiose ChEBI	-	assimilation
[Ref.: #67913]	myo-inositol ChEBI	-	assimilation
[Ref.: #67913]	nitrate ChEBI	-	reduction
[Ref.: #67913]	phenylacetate ChEBI	+	carbon source
[Ref.: #67913]	pyruvate ChEBI	+	carbon source
[Ref.: #67913]	raffinose ChEBI	+	carbon source
[Ref.: #67913]	sodium formate ChEBI	-	assimilation
[Ref.: #67913]	starch ChEBI	-	hydrolysis
[Ref.: #67913]	succinate ChEBI	+	carbon source
[Ref.: #67913]	sucrose ChEBI	-	assimilation
[Ref.: #67913]	trehalose ChEBI	-	assimilation
[Ref.: #67913]	tween 20 ChEBI	-	hydrolysis
[Ref.: #67913]	tween 40 ChEBI	-	hydrolysis
[Ref.: #67913]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67913]	Bacteriochlorophyll alpha	no
[Ref.: #67913]	hydrogen sulfide ChEBI	no
[Ref.: #67913]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #67913]	acid phosphatase	+	3.1.3.2
[Ref.: #67913]	alkaline phosphatase	+	3.1.3.1
[Ref.: #67913]	alpha-fucosidase	-	3.2.1.51
[Ref.: #67913]	alpha-galactosidase	-	3.2.1.22
[Ref.: #67913]	alpha-glucosidase	-	3.2.1.20
[Ref.: #67913]	alpha-mannosidase	-	3.2.1.24
[Ref.: #67913]	arginine dihydrolase	-	3.5.3.6
[Ref.: #67913]	beta-galactosidase	-	3.2.1.23
[Ref.: #67913]	beta-glucosidase	-	3.2.1.21
[Ref.: #67913]	beta-glucuronidase	-	3.2.1.31
[Ref.: #67913]	beta-N-acetylgalactosaminidase	-
[Ref.: #67913]	catalase	+	1.11.1.6
[Ref.: #67913]	chymotrypsin	-	3.4.4.5
[Ref.: #67913]	cystine arylamidase	-	3.4.11.3
[Ref.: #67913]	cytochrome oxidase	+	1.9.3.1
[Ref.: #67913]	esterase (C 4)	+
[Ref.: #67913]	esterase Lipase (C 8)	+
[Ref.: #67913]	leucine arylamidase	+	3.4.11.1
[Ref.: #67913]	lipase (C 14)	-
[Ref.: #67913]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #67913]	protease	+
[Ref.: #67913]	trypsin	-	3.4.21.4
[Ref.: #67913]	urease	-	3.5.1.5
[Ref.: #67913]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #67913]

Fatty acid	Percentage
C18:1 w7c / C18:1 w6c	72.8
C18:1 w7c 11-Methyl	9.2
C16:0	5.9
C16:0 2OH	3.7
C10:0 3OH	1.8
C18:0	1.8
C12:0	1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Tidal flat near Muui-do
[Ref.: #67770]	Geographic location (country and/or sea, region)	Incheon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67913]	Sample type/isolated from	soil of a tidal flat
[Ref.: #67913]	Sampling date	2014-09
[Ref.: #67913]	Geographic location (country and/or sea, region)	near Muui-do, Incheon
[Ref.: #67913]	Country	Republic of Korea
[Ref.: #67913]	Country ISO 3 Code	KOR
[Ref.: #67913]	Continent	Asia
[Ref.: #67913]	Geographic location	37.6806°/126.6950°
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KP410680 (>99% sequence identity) for Roseovarius faecimaris subclade from Microbeatlas

Aquatic Samples	732
Soil Samples	1
Animal Samples	4
Plant Samples	2
Total Samples	739

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Roseovarius faecimaris 16S ribosomal RNA gene, partial sequence	KP410680	1399	GenBank ENA	2494550 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Roseovarius faecimaris MME-070	GCA_009762325	complete	GenBank ENA	2494550 tax ID	*
[Ref.: #66792]	Roseovarius faecimaris MME-070	2884656269	complete	JGI IMG/M	2494550 tax ID	*

[Ref.: #67770]

GC-content

63.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Roseovarius faecimaris MME-070 NCBI: GCA_009762325.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Roseovarius faecimaris MME-070 NCBI: GCA_009762325.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.333	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.801	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.352	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.688	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.191	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	70.34	yes

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30757, KCCM 43142

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Roseovarius faecimaris sp. nov., isolated from a tidal flat.	Cha IT, Cho ES, Choi HJ, Roh SW, Seo MJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003345	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#67913

In-Tae Cha, Eui-Sang Cho, Hak-Jong Choi, Seong Woon Roh, Myung-Ji Seo: Roseovarius faecimaris sp. nov., isolated from a tidal flat. IJSEM 69: 1465 - 1471 2019 ( DOI 10.1099/ijsem.0.003345 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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