[Ref.: #10621] |
Sample type/isolated from |
potato |
[Ref.: #10621] |
Geographic location (country and/or sea, region) |
Hokkaido |
[Ref.: #10621] |
Country |
Japan |
[Ref.: #10621] |
Country ISO 3 Code |
JPN |
[Ref.: #10621] |
Continent |
Asia |
|
[Ref.: #67770] |
Sample type/isolated from |
Potato tubers with erumpent scab lesions |
[Ref.: #67770] |
Geographic location (country and/or sea, region) |
Syari-cho, Hokkaido |
[Ref.: #67770] |
Country |
Japan |
[Ref.: #67770] |
Country ISO 3 Code |
JPN |
[Ref.: #67770] |
Continent |
Asia |
|
[Ref.: #123693] |
Sample type/isolated from |
Potato tuber |
[Ref.: #123693] |
Geographic location (country and/or sea, region) |
Hokkaido |
[Ref.: #123693] |
Country |
Japan |
[Ref.: #123693] |
Country ISO 3 Code |
JPN |
[Ref.: #123693] |
Continent |
Asia |
[Ref.: #123693] |
Isolation date |
1991 |
* marker position based on {}
|
|
Isolation sources categories |
#Host |
#Plants |
#Herbaceous plants (Grass,Crops) |
#Host Body-Site |
#Plant |
#Root (Rhizome) |
|
 |
-
Information on genomic background e.g. entries in nucleic sequence databass
Sequence information
|
16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
|
|
Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #20218] |
Streptomyces sp. 16S ribosomal RNA, complete sequence |
D63866 |
1530 |
|
1931 tax ID |
* |
[Ref.: #20218] |
Streptomyces turgidiscabies gene for 16S ribosomal RNA, 23S ribosomal RNA, complete and partial sequence, strain:ATCC 700248 |
AB026221 |
1865 |
|
85558 tax ID |
* |
[Ref.: #20218] |
Streptomyces turgidiscabies gene for 16S rRNA, 16S-23S intergenic spacer, 23S rRNA, partial and complete sequence, isolate:ATCC 700248, clone:T3 |
AB041138 |
340 |
|
85558 tax ID |
* |
[Ref.: #20218] |
Streptomyces turgidiscabies strain ATCC 700248 clone ITS1 16S-23S ribosomal RNA intergenic spacer, partial sequence |
AY296927 |
286 |
|
85558 tax ID |
* |
[Ref.: #20218] |
Streptomyces turgidiscabies strain ATCC 700248 clone ITS10 16S-23S ribosomal RNA intergenic spacer, partial sequence |
AY296928 |
282 |
|
85558 tax ID |
* |
[Ref.: #20218] |
Streptomyces turgidiscabies strain ATCC 700248 clone ITS20 16S-23S ribosomal RNA intergenic spacer, partial sequence |
AY296929 |
282 |
|
85558 tax ID |
* |
[Ref.: #20218] |
Streptomyces turgidiscabies strain ATCC 700248 clone ITS24 16S-23S ribosomal RNA intergenic spacer, partial sequence |
AY296930 |
281 |
|
85558 tax ID |
* |
[Ref.: #20218] |
Streptomyces turgidiscabies gene for 16S rRNA, partial sequence, strain: NBRC 16080 |
AB249924 |
1452 |
|
85558 tax ID |
* |
|
|
-
Availability in culture collections
External links
[Ref.: #10621] |
Culture collection no. |
DSM 41838, ATCC 700248, IFO 16080, JCM 10429, NBRC 16080, CIP 105577, KACC 20121, NRRL B-24078 |
[Ref.: #85437] |
SI-ID 43843
|
* |
 |
Literature: |
Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries. |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Phylogeny |
Streptomyces lacrimifluminis sp. nov., a novel actinobacterium that produces antibacterial compounds, isolated from soil. |
Zhang B, Tang S, Chen X, Zhang L, Zhang G, Zhang W, Liu G, Chen T, Li S, Dyson P |
Int J Syst Evol Microbiol |
10.1099/ijsem.0.001456 |
2016 |
* |
Phylogeny |
Streptomyces geranii sp. nov., a novel endophytic actinobacterium isolated from root of Geranium carolinianum L. |
Li X, Lai X, Gan L, Long X, Hou Y, Zhang Y, Tian Y |
Int J Syst Evol Microbiol |
10.1099/ijsem.0.002876 |
2018 |
* |
Phylogeny |
Streptomyces castaneus sp. nov., a novel actinomycete isolated from the rhizosphere of Peucedanum praeruptorum Dunn. |
Zhou S, Li Z, Bai L, Yan K, Zhao J, Lu C, Liu C, Wang X, Xiang W |
Arch Microbiol |
10.1007/s00203-016-1274-9 |
2016 |
* |
Phylogeny |
Streptomyces graminilatus sp. nov., isolated from bamboo litter. |
Lee HJ, Whang KS |
Int J Syst Evol Microbiol |
10.1099/ijs.0.049528-0 |
2013 |
* |
Enzymology |
Structure and biosynthesis of scabichelin, a novel tris-hydroxamate siderophore produced by the plant pathogen Streptomyces scabies 87.22. |
Kodani S, Bicz J, Song L, Deeth RJ, Ohnishi-Kameyama M, Yoshida M, Ochi K, Challis GL |
Org Biomol Chem |
10.1039/c3ob40536b |
2013 |
* |
Phylogeny |
Streptomyces turgidiscabies sp. nov. |
Miyajima K, Tanaka F, Takeuchi T, Kuninaga S |
Int J Syst Bacteriol |
10.1099/00207713-48-2-495 |
1998 |
* |
|
First Report of Potato Scab Caused by Streptomyces turgidiscabies in China. |
Zhao WQ, Liu DQ, Yu XM |
Plant Dis |
10.1094/PDIS-92-11-1587C |
2008 |
* |
|
References
-
#10621 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 41838
|
-
-
-
#39320 |
; Curators of the CIP;
|
-
#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
|
-
#68382 |
Automatically annotated from API zym .
|
-
#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
|
-
#85437 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID43843.1 )
|
-
#123693 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 105577
|
- * These data were automatically processed and therefore are not curated
Change proposal
Successfully sent
|
|