Name: Haloprofundus halophilus JCM 30670
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163856

Type strain:

Species: Haloprofundus halophilus

Culture col. no.: JCM 30670, CGMCC 1.14944

Strain history: H.-L. Cui; Jiangsu Univ., China; NK23.

NCBI tax ID(s): 2283527 (species)

Section

Haloprofundus halophilus JCM 30670 is a mesophilic archaeon that was isolated from Inland saline soil sampled from Xinjiang.

mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Haloferacaceae*
	Genus	*Haloprofundus*
	Species	**Haloprofundus halophilus**
	Full Scientific Name (LPSN)	Haloprofundus halophilus Xu et al. 2019

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Inland saline soil sampled from Xinjiang
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KM453697 (>99% sequence identity) for Haloprofundus halophilus subclade from Microbeatlas

Aquatic Samples	33
Soil Samples	8
Animal Samples	8
Plant Samples
Total Samples	49

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halobacteriaceae archaeon NK23 16S ribosomal RNA gene, partial sequence	KM453697	1473	ENA	1552993 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Haloprofundus halophilus NK23	GCA_003439925	contig	GenBank	2283527 tax ID

[Ref.: #67770]

GC-content

65.29 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Haloprofundus halophilus NK23 NCBI: GCA_003439925.1
[Ref.: #69480]	motile	no	85.77	no
[Ref.: #69480]	flagellated	no	97.808	no
[Ref.: #69480]	gram-positive	no	97.116	no
[Ref.: #69480]	anaerobic	no	95.255	no
[Ref.: #69480]	aerobic	yes	83.239	no
[Ref.: #69480]	halophile	yes	86.728	no
[Ref.: #69480]	spore-forming	no	95.429	no
[Ref.: #69480]	glucose-util	yes	89.532	no
[Ref.: #69480]	thermophile	no	79.648	no
[Ref.: #69480]	glucose-ferment	no	84.187	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30670, CGMCC 1.14944

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloprofundus halophilus sp. nov., isolated from the saline soil of Tarim Basin.	Xu Q, Cui HL, Meng F	Antonie Van Leeuwenhoek	10.1007/s10482-018-1186-6	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Haloprofundus halophilus NK23

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