Streptantibioticus ferralitis (DSM 41836, CGMCC 4.1985, NCIMB 13954)

Name: Streptantibioticus ferralitis (DSM 41836, CGMCC 4.1985, NCIMB 13954)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16385

Type strain

Strain Designation SF0p68

Culture col. no. DSM 41836 CGMCC 4.1985 NCIMB 13954 SF0p68 VTT E-072715 1 more

NCBI tax ID(s) 236510

Special Collections DSMZ JCM Wink compendium Literature strains

History DSMZ <- M. Goodfellow; SF0p68 <- D. Saintpierre-Bonaccio, Univ. Newcastle JCM <-- NCIMB 13954 <-- M. Goodfellow SFOp68.

Links

Streptantibioticus ferralitis SF0p68 is an aerobe, spore-forming, Gram-positive bacterium that builds an aerial mycelium and was isolated from ferralitic oxydic soil sample.

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 134442

DSM 41836,NCIMB 13954,CGMCC 4.1985,JCM 14344,VTT E-072715

@ref 20215

Last LPSN update 2026-05-29 08:28:46

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptantibioticus

Species Streptantibioticus ferralitis

Full scientific name Streptantibioticus ferralitis (Saintpierre-Bonaccio et al. 2004) Swiecimska et al. 2023

Synonyms (1)

Streptomyces ferralitis

Morphology

Cell morphology

30057

Gram stainpositive

Colony morphology

@ref	Colony color	Incubation period	Medium used
19532	Beige	10-14 days	ISP 2
19532	Beige	10-14 days	ISP 3
19532	Beige	10-14 days	ISP 4
19532	Beige	10-14 days	ISP 5
19532	Beige	10-14 days	ISP 6
19532	Beige	10-14 days	ISP 7

Multicellular morphology

@ref	Complex name	Complex color	Medium name
19532	Aerial Mycelium	White	ISP 2
19532			ISP 3
19532			ISP 4
19532			ISP 5
19532			ISP 6
19532			ISP 7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
10619	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19532	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19532	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19532	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19532	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19532	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19532	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
10619	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10619	BENNETT'S AGAR (DSMZ Medium 548)	Medium recipe at MediaDive	Name: BENNETT'S AGAR (DSMZ Medium 548) Composition: Agar 15.0 g/l Glucose 10.0 g/l N-Z amine 2.0 g/l Yeast extract 1.0 g/l Beef extract 1.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
10619	positive	growth	28
19532	positive	optimum	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

30057

Oxygen toleranceaerobe

Spore formation

30057

Spore formationyes

Observation

67770

Observationquinones: MK-9(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
19532	22599 ChEBI	arabinose	-
19532	62968 ChEBI	cellulose	-
19532	28757 ChEBI	fructose	-
30057	28260 ChEBI	galactose	+	carbon source
19532	17234 ChEBI	glucose	+
30057	17234 ChEBI	glucose	+	carbon source
19532	29864 ChEBI	mannitol	+
30057	29864 ChEBI	mannitol	+	carbon source
30057	37684 ChEBI	mannose	+	carbon source
19532	17268 ChEBI	myo-inositol	+
19532	16634 ChEBI	raffinose	-
19532	26546 ChEBI	rhamnose	-
19532	17992 ChEBI	sucrose	-
30057	27082 ChEBI	trehalose	+	carbon source
19532	18222 ChEBI	xylose	-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	+	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68382	trypsin	-	3.4.21.4	from API zym
30057	urease	+	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
19532	not determinedn.d.	+	+	+	-	+	+	-	-	-	+	+	+	+	-	+	-	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Geographic location
10619	ferralitic oxydic soil sample	New Caledonia	NCL	Australia and Oceania
67770	Ferralitic, oxidic, ultramafic soil	French Overseas	FRA		southern part of main island of New Caledonia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10619	1	Risk group (German classification) According to TRBA 466
19532	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2922352v1 assembly for Streptantibioticus ferralitis JCM 14344	contig	GCA_029223525	236510.6	8046968153	236510	52.46
124043	ASM3952979v1 assembly for Streptantibioticus ferralitis JCM 14344	scaffold	GCA_039529795			236510	46.28

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
10619	Streptomyces ferralitis 16S ribosomal RNA gene, partial sequence	AY262826	1490		236510

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces ferralitis JCM 14344
NCBI: GCA_029223525.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	82.71	yes
125438	anaerobic	anaerobicⓘ	no	67.78	no
125438	aerobic	aerobicⓘ	yes	66.64	yes
125438	spore-forming	spore-formingⓘ	no	66.16	no
125438	thermophilic	thermophileⓘ	no	91.95	yes
125438	flagellated	motile2+ⓘ	no	87.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Streptantibioticus silvisoli sp. nov., acidotolerant actinomycetes from pine litter, reclassification of Streptomyces cocklensis, Streptomyces ferralitis, Streptomyces parmotrematis and Streptomyces rubrisoli as Actinacidiphila cocklensis comb. nov., Streptantibioticus ferralitis comb. nov., Streptantibioticus parmotrematis comb. nov. and Streptantibioticus rubrisoli comb. nov., and emended descriptions of the genus Streptantibioticus, the family Streptomycetaceae and Streptomyces iconiensis.	Swiecimska M, Golinska P, Sangal V, Wachnowicz B, Goodfellow M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005978	2023
Phylogeny	Streptomyces rubrisoli sp. nov., neutrotolerant acidophilic actinomycetes isolated from red soil.	Guo X, Zhang L, Li X, Gao Y, Ruan J, Huang Y	Int J Syst Evol Microbiol	10.1099/ijs.0.000383	2015
Phylogeny	Streptomyces ferralitis sp. nov., a novel streptomycete isolated from a New-Caledonian ultramafic soil.	Saintpierre-Bonaccio D, Amir H, Pineau R, Lemriss S, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.02891-0	2004

References

#10619	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41836
#19532	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26418	IJSEM 2061 2004 ( DOI 10.1099/ijs.0.02891-0 , PubMed 15545435 )
#30057	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26418
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Streptantibioticus ferralitis (DSM 41836, CGMCC 4.1985, NCIMB 13954)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_029223525

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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