Haloplanus rubicundus (KCCM 43224, JCM 30475, CBA1112)

Name: Haloplanus rubicundus (KCCM 43224, JCM 30475, CBA1112)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 163805

Type strain

Strain Designation CBA1112

Culture col. no. KCCM 43224 JCM 30475 CBA1112

NCBI tax ID(s) 1547898

Special Collections JCM Literature strains

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Haloplanus rubicundus CBA1112 is an aerobe, extremely halophilic, mesophilic prokaryote that forms circular colonies and was isolated from Commercial unrefined solar salt from an artificial salt pan in Korea.

Gram-negative motile pleomorphic-shaped colony-forming aerobe extremely halophilic mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 132459

JCM 30475

@ref 20215

Last LPSN update 2025-12-16 10:09:18

Domain Methanobacteriati

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloferacaceae

Genus Haloplanus

Species Haloplanus rubicundus

Full scientific name Haloplanus rubicundus Kim et al. 2020

BacDive ID	Other strains from **Haloplanus rubicundus** (1)	Type strain
163806	H. rubicundus JCM 30476

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape	Motility
69619	negative	0.45-0.6 µm	pleomorphic-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape
69619	0.2-1.0 mm	red	circular

Culture and growth conditions

Culture medium

@ref	Name	Growth
69619	DBCM2 medium

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic
69619	positive	growth	25-50
69619	positive	optimum	35-40

Culture pH

@ref	Ability	Type	PH
69619	positive	optimum	7
69619	positive	growth	6-8

Physiology and metabolism

Oxygen tolerance

69619

Oxygen toleranceaerobe

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
69619	extremely halophilic	NaCl	positive	growth	15-35 %(w/v)
69619		NaCl	positive	optimum	20 %(w/v)

Observation

@ref	Observation
69619	lysis of cells in distilled water
69619	Anaerobic growth in the presence of DMSO
69619	Requires at least 5 mM Mg2+

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69619	30089 ChEBI	acetate	-	builds acid from
69619	30089 ChEBI	acetate	+	carbon source
69619	30089 ChEBI	acetate	+	energy source
69619		casein	-	hydrolysis
69619	16947 ChEBI	citrate	-	builds acid from
69619	16947 ChEBI	citrate	+	assimilation
69619	16947 ChEBI	citrate	+	carbon source
69619	16947 ChEBI	citrate	+	energy source
69619	17924 ChEBI	D-sorbitol	-	builds acid from
69619	17924 ChEBI	D-sorbitol	+	carbon source
69619	17924 ChEBI	D-sorbitol	+	energy source
69619	29806 ChEBI	fumarate	-	builds acid from
69619	29806 ChEBI	fumarate	+	assimilation
69619	29806 ChEBI	fumarate	+	carbon source
69619	29806 ChEBI	fumarate	+	energy source
69619	5291 ChEBI	gelatin	-	hydrolysis
69619	17754 ChEBI	glycerol	-	builds acid from
69619	17754 ChEBI	glycerol	+	assimilation
69619	17754 ChEBI	glycerol	+	carbon source
69619	17754 ChEBI	glycerol	+	energy source
69619	15428 ChEBI	glycine	-	builds acid from
69619	15428 ChEBI	glycine	+	assimilation
69619	15428 ChEBI	glycine	+	carbon source
69619	15428 ChEBI	glycine	+	energy source
69619	16977 ChEBI	L-alanine	-	builds acid from
69619	16977 ChEBI	L-alanine	-	growth
69619	29991 ChEBI	L-aspartate	-	builds acid from
69619	29991 ChEBI	L-aspartate	+	assimilation
69619	29991 ChEBI	L-aspartate	+	carbon source
69619	29991 ChEBI	L-aspartate	+	energy source
69619	29985 ChEBI	L-glutamate	-	builds acid from
69619	29985 ChEBI	L-glutamate	+	carbon source
69619	29985 ChEBI	L-glutamate	+	energy source
69619	18019 ChEBI	L-lysine	-	builds acid from
69619	18019 ChEBI	L-lysine	+	carbon source
69619	18019 ChEBI	L-lysine	+	energy source
69619	15589 ChEBI	L-malate	-	builds acid from
69619	15589 ChEBI	L-malate	+	assimilation
69619	15589 ChEBI	L-malate	+	carbon source
69619	15589 ChEBI	L-malate	+	energy source
69619	24996 ChEBI	lactate	-	builds acid from
69619	24996 ChEBI	lactate	+	carbon source
69619	24996 ChEBI	lactate	+	energy source
69619	17716 ChEBI	lactose	-	builds acid from
69619	17716 ChEBI	lactose	+	carbon source
69619	17716 ChEBI	lactose	+	energy source
69619	29864 ChEBI	mannitol	-	builds acid from
69619	29864 ChEBI	mannitol	+	carbon source
69619	29864 ChEBI	mannitol	+	energy source
69619	17632 ChEBI	nitrate	+	reduction
69619	15361 ChEBI	pyruvate	-	builds acid from
69619	15361 ChEBI	pyruvate	+	carbon source
69619	15361 ChEBI	pyruvate	+	energy source
69619	28017 ChEBI	starch	-	builds acid from
69619	28017 ChEBI	starch	-	growth
69619	28017 ChEBI	starch	-	hydrolysis
69619	30031 ChEBI	succinate	-	builds acid from
69619	30031 ChEBI	succinate	+	assimilation
69619	30031 ChEBI	succinate	+	carbon source
69619	30031 ChEBI	succinate	+	energy source
69619	17992 ChEBI	sucrose	-	builds acid from
69619	17992 ChEBI	sucrose	+	carbon source
69619	17992 ChEBI	sucrose	+	energy source
69619	27897 ChEBI	tryptophan	-	energy source
69619	53424 ChEBI	tween 20	-	hydrolysis
69619	53423 ChEBI	tween 40	-	hydrolysis
69619	16199 ChEBI	urea	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.
69619	28971	ampicillin	10 µg
69619	17698	chloramphenicol	30 µg
69619	100241	ciprofloxacin	5 µg
69619	48923	erythromycin	15 µg
69619	17833	gentamicin	10 µg
69619	6104	kanamycin	30 µg
69619	17334	penicillin	10 Unit
69619	28077	rifampicin	5 µg
69619	27902	tetracycline	30 µg
69619	28001	vancomycin	30 µg

Metabolite production

@ref	Chebi-ID	Metabolite	Production
69619	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
69619	35581 ChEBI	indole	-

Enzymes

@ref	Value	Activity	Ec
69619	catalase	+	1.11.1.6
69619	cytochrome oxidase	+	1.9.3.1
69619	tryptophan deaminase	-	4.1.99.1

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
67770	Commercial unrefined solar salt from an artificial salt pan in Korea
69619	commercial unrefined solar salt	artificial salt pan	Republic of Korea	KOR	Asia	34.6092	126.287 34.6092/126.287	DSMZ medium no. 954	4 weeks	37

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM334267v1 assembly for Haloplanus rubicundus CBA1112	complete	GCA_003342675	1547898.3	2989230917	1547898	96.91

16S sequences

@ref	Description	Accession	Database	NCBI tax ID
69619	Haloplanus rubicundus from South Korea 16S ribosomal RNA gene, partial sequence	KM360176		1547898

GC content

@ref	GC-content (mol%)	Method
67770	66	genome sequence analysis

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloplanus rubicundus sp. nov., an extremely halophilic archaeon isolated from solar salt.	Kim YB, Kim JY, Song HS, Lee SH, Shin NR, Bae JW, Myoung J, Lee KE, Cha IT, Rhee JK, Roh SW	Syst Appl Microbiol	10.1016/j.syapm.2020.126085	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69619	Yeon Bee Kim, Joon Yong Kim, Hye Seon Song, Se Hee Lee, Na-Ri Shin, Jin-Woo Bae, Jinjong Myoung, Ki-Eun Lee, In-Tae Cha, Jin-Kyu Rhee, Seong Woon Roh: Haloplanus rubicundus sp. nov., an extremely halophilic archaeon isolated from solar salt. Syst Appl Microbiol. 43: 2020 ( DOI 10.1016/j.syapm.2020.126085 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Haloplanus rubicundus (KCCM 43224, JCM 30475, CBA1112)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003342675

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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