Name: Haloplanus rubicundus CBA1112
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163805

Type strain:

Species: Haloplanus rubicundus

Strain Designation: CBA1112

Culture col. no.: JCM 30475, KCCM 43224

Strain history: S. W. Roh; Korea Basic Sci. Inst., South Korea; CBA1112.

NCBI tax ID(s): 1547898 (species)

Other strains from Haloplanus rubicundus

H. rubicundus JCM 30476

Section

Haloplanus rubicundus CBA1112 is an aerobe, extremely halophilic, mesophilic archaeon that forms circular colonies and was isolated from Commercial unrefined solar salt from an artificial salt pan in Korea.

colony-forming
Gram-negative
motile
pleomorphic-shaped
aerobe
extremely halophilic
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Haloferacaceae*
	Genus	*Haloplanus*
	Species	**Haloplanus rubicundus**
	Full Scientific Name (LPSN)	Haloplanus rubicundus Kim et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69619]	Gram stain	negative

[Ref.: #69619]	Cell length	0.45-0.6 µm

[Ref.: #69619]	Cell shape	pleomorphic-shaped

[Ref.: #69619]	Motility	yes

[Ref.: #69619]	Colony size	0.2-1.0 mm
[Ref.: #69619]	Colony color	red
[Ref.: #69619]	Colony shape	circular

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69619]

Culture medium

DBCM2 medium

[Ref.: #69619]

Culture medium growth

		Temperature
[Ref.: #67770]	growth	37 °C
[Ref.: #69619]	growth	25-50 °C
[Ref.: #69619]	optimum	35-40 °C

[Ref.: #67770]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #69619]			optimum	7
[Ref.: #69619]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69619]

Oxygen tolerance

aerobe

[Ref.: #69619]

Halophily / tolerance level

extremely halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69619]		NaCl		growth	15-35	%(w/v)
[Ref.: #69619]		NaCl		optimum	20	%(w/v)

[Ref.: #69619]	Observation	lysis of cells in distilled water
[Ref.: #69619]	Observation	Anaerobic growth in the presence of DMSO
[Ref.: #69619]	Observation	Requires at least 5 mM Mg2+

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69619]	acetate ChEBI	-	builds acid from
[Ref.: #69619]	acetate ChEBI	+	carbon source
[Ref.: #69619]	acetate ChEBI	+	energy source
[Ref.: #69619]	casein	-	hydrolysis
[Ref.: #69619]	citrate ChEBI	-	builds acid from
[Ref.: #69619]	citrate ChEBI	+	assimilation
[Ref.: #69619]	citrate ChEBI	+	carbon source
[Ref.: #69619]	citrate ChEBI	+	energy source
[Ref.: #69619]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #69619]	D-sorbitol ChEBI	+	carbon source
[Ref.: #69619]	D-sorbitol ChEBI	+	energy source
[Ref.: #69619]	fumarate ChEBI	-	builds acid from
[Ref.: #69619]	fumarate ChEBI	+	assimilation
[Ref.: #69619]	fumarate ChEBI	+	carbon source
[Ref.: #69619]	fumarate ChEBI	+	energy source
[Ref.: #69619]	gelatin ChEBI	-	hydrolysis
[Ref.: #69619]	glycerol ChEBI	-	builds acid from
[Ref.: #69619]	glycerol ChEBI	+	assimilation
[Ref.: #69619]	glycerol ChEBI	+	carbon source
[Ref.: #69619]	glycerol ChEBI	+	energy source
[Ref.: #69619]	glycine ChEBI	-	builds acid from
[Ref.: #69619]	glycine ChEBI	+	assimilation
[Ref.: #69619]	glycine ChEBI	+	carbon source
[Ref.: #69619]	glycine ChEBI	+	energy source
[Ref.: #69619]	L-alanine ChEBI	-	builds acid from
[Ref.: #69619]	L-alanine ChEBI	-	growth
[Ref.: #69619]	L-aspartate ChEBI	-	builds acid from
[Ref.: #69619]	L-aspartate ChEBI	+	assimilation
[Ref.: #69619]	L-aspartate ChEBI	+	carbon source
[Ref.: #69619]	L-aspartate ChEBI	+	energy source
[Ref.: #69619]	L-glutamate ChEBI	-	builds acid from
[Ref.: #69619]	L-glutamate ChEBI	+	carbon source
[Ref.: #69619]	L-glutamate ChEBI	+	energy source
[Ref.: #69619]	L-lysine ChEBI	-	builds acid from
[Ref.: #69619]	L-lysine ChEBI	+	carbon source
[Ref.: #69619]	L-lysine ChEBI	+	energy source
[Ref.: #69619]	L-malate ChEBI	-	builds acid from
[Ref.: #69619]	L-malate ChEBI	+	assimilation
[Ref.: #69619]	L-malate ChEBI	+	carbon source
[Ref.: #69619]	L-malate ChEBI	+	energy source
[Ref.: #69619]	lactate ChEBI	-	builds acid from
[Ref.: #69619]	lactate ChEBI	+	carbon source
[Ref.: #69619]	lactate ChEBI	+	energy source
[Ref.: #69619]	lactose ChEBI	-	builds acid from
[Ref.: #69619]	lactose ChEBI	+	carbon source
[Ref.: #69619]	lactose ChEBI	+	energy source
[Ref.: #69619]	mannitol ChEBI	-	builds acid from
[Ref.: #69619]	mannitol ChEBI	+	carbon source
[Ref.: #69619]	mannitol ChEBI	+	energy source
[Ref.: #69619]	nitrate ChEBI	+	reduction
[Ref.: #69619]	pyruvate ChEBI	-	builds acid from
[Ref.: #69619]	pyruvate ChEBI	+	carbon source
[Ref.: #69619]	pyruvate ChEBI	+	energy source
[Ref.: #69619]	starch ChEBI	-	builds acid from
[Ref.: #69619]	starch ChEBI	-	growth
[Ref.: #69619]	starch ChEBI	-	hydrolysis
[Ref.: #69619]	succinate ChEBI	-	builds acid from
[Ref.: #69619]	succinate ChEBI	+	assimilation
[Ref.: #69619]	succinate ChEBI	+	carbon source
[Ref.: #69619]	succinate ChEBI	+	energy source
[Ref.: #69619]	sucrose ChEBI	-	builds acid from
[Ref.: #69619]	sucrose ChEBI	+	carbon source
[Ref.: #69619]	sucrose ChEBI	+	energy source
[Ref.: #69619]	tryptophan ChEBI	-	energy source
[Ref.: #69619]	tween 20 ChEBI	-	hydrolysis
[Ref.: #69619]	tween 40 ChEBI	-	hydrolysis
[Ref.: #69619]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic resistance	Concentration
[Ref.: #69619]	ampicillin ChEBI	yes	10	µg
[Ref.: #69619]	chloramphenicol ChEBI	yes	30	µg
[Ref.: #69619]	ciprofloxacin ChEBI	yes	5	µg
[Ref.: #69619]	erythromycin ChEBI	yes	15	µg
[Ref.: #69619]	gentamicin ChEBI	yes	10	µg
[Ref.: #69619]	kanamycin ChEBI	yes	30	µg
[Ref.: #69619]	penicillin ChEBI	yes	10	Unit
[Ref.: #69619]	rifampicin ChEBI	yes	5	µg
[Ref.: #69619]	tetracycline ChEBI	yes	30	µg
[Ref.: #69619]	vancomycin ChEBI	yes	30	µg

	Metabolite production	Metabolite	Production
[Ref.: #69619]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #69619]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #69619]	catalase	+	1.11.1.6
[Ref.: #69619]	cytochrome oxidase	+	1.9.3.1
[Ref.: #69619]	tryptophan deaminase	-	4.1.99.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Commercial unrefined solar salt from an artificial salt pan in Korea

[Ref.: #69619]	Sample type/isolated from	commercial unrefined solar salt
[Ref.: #69619]	Geographic location (country and/or sea, region)	artificial salt pan
[Ref.: #69619]	Country	Republic of Korea
[Ref.: #69619]	Country ISO 3 Code	KOR
[Ref.: #69619]	Continent	Asia
[Ref.: #69619]	Geographic location	34.6092°/126.2870°
[Ref.: #69619]	Enrichment culture	DSMZ medium no. 954
[Ref.: #69619]	Enrichment culture duration	4 weeks
[Ref.: #69619]	Enrichment culture temperature	37 ̊C
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #69619]	16S rRNA gene sequence	KM360176		ENA	1547898 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Haloplanus rubicundus CBA1112	GCA_003342675	complete	GenBank	1547898 tax ID
[Ref.: #69619]	Whole genome shotgun	CP031147		GenBank	1547898 tax ID
[Ref.: #69619]	Whole genome shotgun	CP031148		GenBank	1547898 tax ID
[Ref.: #69619]	Whole genome shotgun	CP031149		GenBank	1547898 tax ID

[Ref.: #67770]

GC-content

66 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30475, KCCM 43224

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloplanus rubicundus sp. nov., an extremely halophilic archaeon isolated from solar salt.	Kim YB, Kim JY, Song HS, Lee SH, Shin NR, Bae JW, Myoung J, Lee KE, Cha IT, Rhee JK, Roh SW	Syst Appl Microbiol	10.1016/j.syapm.2020.126085	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69619

Yeon Bee Kim, Joon Yong Kim, Hye Seon Song, Se Hee Lee, Na-Ri Shin, Jin-Woo Bae, Jinjong Myoung, Ki-Eun Lee, In-Tae Cha, Jin-Kyu Rhee, Seong Woon Roh: Haloplanus rubicundus sp. nov., an extremely halophilic archaeon isolated from solar salt. Syst Appl Microbiol. 43: 2020 ( DOI 10.1016/j.syapm.2020.126085 )

* These data were automatically processed and therefore are not curated

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