Name: Marinobacter halophilus JCM 30472
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163804

Type strain:

Species: Marinobacter halophilus

Culture col. no.: JCM 30472, CGMCC 1.12481

Strain history: Z.-P. Liu; Inst. of Microbiol., CAS, China; XCD-X12.

NCBI tax ID(s): 1323740 (species)

Section

Marinobacter halophilus JCM 30472 is a mesophilic, Gram-negative bacterium that was isolated from Xiaochaidan Lake in Qaidam basin.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Marinobacter*
	Species	**Marinobacter halophilus**
	Full Scientific Name (LPSN)	Marinobacter halophilus Zhong et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.99

[Ref.: #69480]	Motility	yes Confidence in %98.941

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.992
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Xiaochaidan Lake in Qaidam basin
[Ref.: #67770]	Geographic location (country and/or sea, region)	Qinghai Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Marinobacter halophilus strain XCD-X12 16S ribosomal RNA gene, partial sequence	KC762322	1458	ENA	1323740 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Marinobacter halophilus JCM 30472	GCA_003007685	scaffold	GenBank	1323740 tax ID
[Ref.: #66792]	Marinobacter halophilus CGMCC 1.12481	GCA_014637865	scaffold	GenBank	1323740 tax ID	*
[Ref.: #66792]	Marinobacter halophilus strain CGMCC 1.12481	1323740.5	wgs	PATRIC	1323740 tax ID	*
[Ref.: #66792]	Marinobacter halophilus strain JCM 30472	1323740.3	wgs	PATRIC	1323740 tax ID	*
[Ref.: #66792]	Marinobacter halophilus JCM 30472	2855219044	draft	JGI IMG/M	1323740 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Marinobacter halophilus JCM 30472 NCBI: GCA_003007685.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marinobacter halophilus CGMCC 1.12481 NCBI: GCA_014637865.1
[Ref.: #69480]	flagellated	yes	86.804	no
[Ref.: #69480]	gram-positive	no	98.966	no
[Ref.: #69480]	anaerobic	no	95.572	no
[Ref.: #69480]	aerobic	yes	84.967	no
[Ref.: #69480]	halophile	yes	91.741	no
[Ref.: #69480]	spore-forming	no	96.982	no
[Ref.: #69480]	thermophile	no	99.51	no
[Ref.: #69480]	glucose-util	no	58.436	no
[Ref.: #69480]	motile	yes	93.856	no
[Ref.: #69480]	glucose-ferment	no	88.778	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30472, CGMCC 1.12481

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacter fuscus sp. nov., a marine bacterium of Gammaproteobacteria isolated from surface seawater.	Liu Q, Xamxidin M, Sun C, Cheng H, Meng FX, Wu YH, Wang CS, Xu XW	Int J Syst Evol Microbiol	10.1099/ijsem.0.002956	2018	*
Phylogeny	Marinobacter halophilus sp. nov., a halophilic bacterium isolated from a salt lake.	Zhong ZP, Liu Y, Liu HC, Wang F, Zhou YG, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.000338	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Marinobacter halophilus JCM 30472

Marinobacter halophilus CGMCC 1.12481

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