Oceanisphaera psychrotolerans (ACCC 06516, JCM 30466)

Name: Oceanisphaera psychrotolerans (ACCC 06516, JCM 30466)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 163801

Type strain

Culture col. no. ACCC 06516 JCM 30466

NCBI tax ID(s) 1414654

Special Collections JCM

History JCM <-- Z. Ruan; Inst. of Agric. Resour. & Reg. Plann., CAAS, China; LAM-WHM-ZC.

Links

Oceanisphaera psychrotolerans JCM 30466 is a bacterium that was isolated from Coastal sediment from the Bohai Sea.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132544

JCM 30466

@ref 20215

Last LPSN update 2026-05-29 08:45:15

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Aeromonadales

Family Aeromonadaceae

Genus Oceanisphaera

Species Oceanisphaera psychrotolerans

Full scientific name Oceanisphaera psychrotolerans Zhou et al. 2015

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.037
125438	negative	99

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	91.578

Spore formation

@ref	Spore formation	Confidence
125439		99.903

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Coastal sediment from the Bohai Sea	near Yantai	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KF418814 (>99% sequence identity) for Oceanisphaera from Microbeatlas

Aquatic Samples	42
Soil Samples	3
Animal Samples	1
Plant Samples	0
Total Samples	46

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
67770	ASM187048v1 assembly for Oceanisphaera psychrotolerans LAM-WHM-ZC	contig	GCA_001870485	2788500274	1414654	57.92

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Oceanisphaera psychrotolerans strain LAM-WHM-ZC 16S ribosomal RNA gene, partial sequence	KF418814	1422		1414654

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM187048v1 assembly for Oceanisphaera psychrotolerans LAM-WHM-ZC
NCBI: GCA_001870485

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.58	no
125439	gram_stain	BacteriaNetⓘ	negative	99.04	no
125439	motility	BacteriaNetⓘ	yes	86.72	no
125439	spore_formation	BacteriaNetⓘ	no	99.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Oceanisphaera psychrotolerans LAM-WHM-ZC
NCBI: GCA_001870485.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	97.11	no
125438	aerobic	aerobicⓘ	yes	67.06	no
125438	spore-forming	spore-formingⓘ	no	89.29	no
125438	thermophilic	thermophileⓘ	no	99.00	yes
125438	flagellated	motile2+ⓘ	yes	89.98	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oceanisphaera psychrotolerans sp. nov., isolated from coastal sediment samples.	Zhou S, Wang H, Wang Y, Ma K, He M, Chen X, Kong D, Guo X, Ruan Z, Zhao B	Int J Syst Evol Microbiol	10.1099/ijs.0.000331	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Oceanisphaera psychrotolerans (ACCC 06516, JCM 30466)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001870485

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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