Name: Oceanisphaera psychrotolerans JCM 30466
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 163801

Type strain:

Species: Oceanisphaera psychrotolerans

Culture col. no.: JCM 30466, ACCC 06516

Strain history: Z. Ruan; Inst. of Agric. Resour. & Reg. Plann., CAAS, China; LAM-WHM-ZC.

NCBI tax ID(s): 1414654 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Oceanisphaera psychrotolerans JCM 30466 is a mesophilic bacterium that was isolated from Coastal sediment from the Bohai Sea.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Aeromonadales*
	Family	*Aeromonadaceae*
	Genus	*Oceanisphaera*
	Species	**Oceanisphaera psychrotolerans**
	Full Scientific Name (LPSN)	Oceanisphaera psychrotolerans Zhou et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #125439]	Gram stain	negative Confidence in %99.7
[Ref.: #125438]	Gram stain	negative Confidence in %99

[Ref.: #125439]	Motility	yes Confidence in %90.2

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

obligate aerobe Confidence in %91.6

[Ref.: #125439]

Ability of spore formation

no Confidence in %99.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Coastal sediment from the Bohai Sea
[Ref.: #67770]	Geographic location (country and/or sea, region)	near Yantai
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KF418814 (>99% sequence identity) for Oceanisphaera from Microbeatlas

Aquatic Samples	42
Soil Samples	3
Animal Samples	1
Plant Samples
Total Samples	46

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Oceanisphaera psychrotolerans strain LAM-WHM-ZC 16S ribosomal RNA gene, partial sequence	KF418814	1422	GenBank ENA	1414654 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Oceanisphaera psychrotolerans LAM-WHM-ZC	GCA_001870485	contig	GenBank ENA	1414654 tax ID

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Oceanisphaera psychrotolerans LAM-WHM-ZC NCBI: GCA_001870485.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	99	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.108	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	67.059	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	89.286	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	99	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	89.977	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Oceanisphaera psychrotolerans LAM-WHM-ZC NCBI: GCA_001870485
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	99.6
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	90.2
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.7
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	91.6

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30466, ACCC 06516

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oceanisphaera psychrotolerans sp. nov., isolated from coastal sediment samples.	Zhou S, Wang H, Wang Y, Ma K, He M, Chen X, Kong D, Guo X, Ruan Z, Zhao B	Int J Syst Evol Microbiol	10.1099/ijs.0.000331	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Oceanisphaera psychrotolerans in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Oceanisphaera psychrotolerans LAM-WHM-ZC

Oceanisphaera psychrotolerans LAM-WHM-ZC

Change proposal

Change proposal