Aequorivita echinoideorum (BCRC 80886, JCM 30378)

Name: Aequorivita echinoideorum (BCRC 80886, JCM 30378)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 163775

Type strain

Culture col. no. BCRC 80886 JCM 30378

NCBI tax ID(s) 1549647

Special Collections JCM

History C.-C. Young; Natl. Chung Hsing Univ., Taiwan; CC-CZW007.

Links

Aequorivita echinoideorum JCM 30378 is a bacterium that was isolated from Seafood samples .

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27966

BCRC 80886,JCM 30378

@ref 20215

Last LPSN update 2026-02-09 11:39:41

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Aequorivita

Species Aequorivita echinoideorum

Full scientific name Aequorivita echinoideorum (Lin et al. 2015) Hahnke et al. 2017

Synonyms (1)

Vitellibacter echinoideorum

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	94
125438	97.95	negative
125439	99.7	negative

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.8

Spore formation

@ref	Spore formation	Confidence
125438		92.333
125439		96.7

Observation

67770

Observationquinones: MK-6

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Seafood samples (sea urchins)	Penghu Island	Taiwan, Province of China	TWN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KM085326 (>99% sequence identity) for Aequorivita echinoideorum subclade from Microbeatlas

Aquatic Samples	54
Soil Samples	39
Animal Samples	22
Plant Samples	8
Total Samples	123

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1847664v1 assembly for Aequorivita echinoideorum JCM30378	contig	GCA_018476645	1549647.3	3001868148	1549647	65.39

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Aequorivita echinoideorum strain CC-CZW007 16S ribosomal RNA gene, partial sequence	KM085326	1508		1549647

GC content

@ref	GC-content (mol%)	Method
67770	34.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aequorivita echinoideorum JCM30378
NCBI: GCA_018476645

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.70	no
125439	motility	BacteriaNetⓘ	no	83.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aequorivita echinoideorum strain JCM30378
PATRIC: 1549647.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.95	no
125438	anaerobic	anaerobicⓘ	no	97.69	no
125438	spore-forming	spore-formingⓘ	no	92.33	no
125438	aerobic	aerobicⓘ	yes	85.54	no
125438	thermophilic	thermophileⓘ	no	95.93	no
125438	flagellated	motile2+ⓘ	no	94.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genome-Based Taxonomic Classification of Bacteroidetes.	Hahnke RL, Meier-Kolthoff JP, Garcia-Lopez M, Mukherjee S, Huntemann M, Ivanova NN, Woyke T, Kyrpides NC, Klenk HP, Goker M.	Front Microbiol	10.3389/fmicb.2016.02003	2016
Phylogeny	Aequorivita iocasae sp. nov., a halophilic bacterium isolated from sediment collected at a cold seep field in the South China Sea.	Zhang H, Wang H, Cao L, Chen H, Zhong Z, Wang M, Lian C, Liu R, Zhou L, Li C	Int J Syst Evol Microbiol	10.1099/ijsem.0.005199	2022
Phylogeny	Vitellibacter echinoideorum sp. nov., isolated from a sea urchin (Tripneustes gratilla).	Lin SY, Hameed A, Wen CZ, Liu YC, Hsu YH, Shen FT, Lai WA, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.000258	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aequorivita echinoideorum (BCRC 80886, JCM 30378)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_018476645

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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