Name: Aequorivita echinoideorum JCM 30378
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163775

Type strain:

Species: Aequorivita echinoideorum

Culture col. no.: JCM 30378, BCRC 80886

Strain history: C.-C. Young; Natl. Chung Hsing Univ., Taiwan; CC-CZW007.

NCBI tax ID(s): 1549647 (species)

Section

Aequorivita echinoideorum JCM 30378 is a mesophilic, Gram-negative bacterium that was isolated from Seafood samples .

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Aequorivita*
	Species	**Aequorivita echinoideorum**
	Full Scientific Name (LPSN)	Aequorivita echinoideorum (Lin et al. 2015) Hahnke et al. 2017

Synonym

Vitellibacter echinoideorum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.997

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Seafood samples (sea urchins)
[Ref.: #67770]	Geographic location (country and/or sea, region)	Penghu Island
[Ref.: #67770]	Country	Taiwan
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KM085326 (>99% sequence identity) for Aequorivita echinoideorum subclade from Microbeatlas

Aquatic Samples	54
Soil Samples	39
Animal Samples	22
Plant Samples	8
Total Samples	123

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Vitellibacter echinoideorum strain CC-CZW007 16S ribosomal RNA gene, partial sequence	KM085326	1508	ENA	1549647 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aequorivita echinoideorum JCM30378	GCA_018476645	contig	GenBank	1549647 tax ID	*
[Ref.: #66792]	Aequorivita echinoideorum strain JCM30378	1549647.3	wgs	PATRIC	1549647 tax ID	*

[Ref.: #67770]

GC-content

34.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aequorivita echinoideorum strain JCM30378 PATRIC: 1549647.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aequorivita echinoideorum strain JCM30378 PATRIC: 1549647.3
[Ref.: #69480]	motile	no	83.989	no
[Ref.: #69480]	gram-positive	no	98.677	no
[Ref.: #69480]	anaerobic	no	99.114	no
[Ref.: #69480]	aerobic	yes	94.081	no
[Ref.: #69480]	halophile	yes	64.703	no
[Ref.: #69480]	spore-forming	no	96.135	no
[Ref.: #69480]	thermophile	no	99.295	yes
[Ref.: #69480]	glucose-util	yes	78.711	no
[Ref.: #69480]	flagellated	no	96.171	no
[Ref.: #69480]	glucose-ferment	no	91.006	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30378, BCRC 80886

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aequorivita iocasae sp. nov., a halophilic bacterium isolated from sediment collected at a cold seep field in the South China Sea.	Zhang H, Wang H, Cao L, Chen H, Zhong Z, Wang M, Lian C, Liu R, Zhou L, Li C	Int J Syst Evol Microbiol	10.1099/ijsem.0.005199	2022	*
Phylogeny	Vitellibacter echinoideorum sp. nov., isolated from a sea urchin (Tripneustes gratilla).	Lin SY, Hameed A, Wen CZ, Liu YC, Hsu YH, Shen FT, Lai WA, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.000258	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Aequorivita echinoideorum strain JCM30378

Aequorivita echinoideorum strain JCM30378

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