Salinigranum halophilum (CGMCC 1.12860, JCM 30238)

Name: Salinigranum halophilum (CGMCC 1.12860, JCM 30238)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 163752

Type strain

Culture col. no. CGMCC 1.12860 JCM 30238

NCBI tax ID(s) 2565931

Special Collections JCM

History H.-L. Cui; Jiangsu Univ., China; YJ-53.

Links

Salinigranum halophilum JCM 30238 is a mesophilic prokaryote that was isolated from Yangjiang marine solar saltern.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 132519

JCM 30238

@ref 20215

Last LPSN update 2026-02-09 11:39:41

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloferacaceae

Genus Salinigranum

Species Salinigranum halophilum

Full scientific name Salinigranum halophilum Zhao et al. 2020

BacDive ID	Other strains from **Salinigranum halophilum** (2)	Type strain
163754	S. halophilum JCM 30240, CGMCC 1.12867
164603	S. halophilum JCM 33557, CGMCC 1.13779

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		96.1

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Yangjiang marine solar saltern	Guangdong Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KJ689298 (>99% sequence identity) for Salinigranum halophilum subclade from Microbeatlas

Aquatic Samples	452
Soil Samples	80
Animal Samples	1
Plant Samples	1
Total Samples	534

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM700473v1 assembly for Salinigranum halophilum YJ-53	scaffold	GCA_007004735	2565931.3	2994753587	2565931	75.8

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Salinigranum halophilum from China 16S ribosomal RNA gene, partial sequence	KJ689298	1366		2565931

GC content

@ref	GC-content (mol%)	Method
67770	66.1	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Salinigranum halophilum YJ-53
NCBI: GCA_007004735

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.10	no
125439	motility	BacteriaNetⓘ	yes	63.00	no
125439	gram_stain	BacteriaNetⓘ	negative	85.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	70.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Salinigranum halophilum YJ-53
NCBI: GCA_007004735.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	75.74	no
125438	anaerobic	anaerobicⓘ	no	75.92	no
125438	aerobic	aerobicⓘ	yes	72.11	no
125438	spore-forming	spore-formingⓘ	no	87.09	no
125438	thermophilic	thermophileⓘ	no	82.89	yes
125438	flagellated	motile2+ⓘ	no	85.03	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinigranum halophilum sp. nov., isolated from marine solar salterns.	Zhao YJ, Tao CQ, Zeng CL, Zhu L, Cui HL	Int J Syst Evol Microbiol	10.1099/ijsem.0.003951	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salinigranum halophilum (CGMCC 1.12860, JCM 30238)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_007004735

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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