Alcaligenes pakistanensis (NCCP 650, LMG 28368, KCTC 42083)

Name: Alcaligenes pakistanensis (NCCP 650, LMG 28368, KCTC 42083)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 163738

Type strain

Culture col. no. NCCP 650 LMG 28368 KCTC 42083 JCM 30216

NCBI tax ID(s) 1482717

Special Collections JCM KCTC

History I. Ahmed; Natl. Agric. Res. Center, Pakistan; NCCP-650.

Links

Alcaligenes pakistanensis JCM 30216 is a mesophilic prokaryote that was isolated from Industrial waste water discharge channel of an industrial area.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 270029

LMG 28368,KCTC 42083,JCM 30216

@ref 20215

Last LPSN update 2026-02-09 11:39:41

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Alcaligenes

Species Alcaligenes pakistanensis

Full scientific name Alcaligenes pakistanensis Abbas et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.979
125439	negative	99.5

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.7

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Industrial waste water discharge channel of an industrial area	Islamabad	Pakistan	PAK	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1465281v1 assembly for Alcaligenes pakistanensis KCTC 42083	scaffold	GCA_014652815	1482717.3	2995557261	1482717	67.34

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Alcaligenes pakistanensis gene for 16S ribosomal RNA, partial sequence, strain: NCCP-650	AB920828	1412		1482717

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Alcaligenes pakistanensis KCTC 42083
NCBI: GCA_014652815

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.70	no
125439	motility	BacteriaNetⓘ	yes	89.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	84.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alcaligenes pakistanensis KCTC 42083
NCBI: GCA_014652815.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.98	no
125438	anaerobic	anaerobicⓘ	no	97.10	no
125438	aerobic	aerobicⓘ	yes	89.73	no
125438	spore-forming	spore-formingⓘ	no	88.68	no
125438	thermophilic	thermophileⓘ	no	97.40	yes
125438	flagellated	motile2+ⓘ	yes	80.19	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Antifungal potential of non-ribosomal peptide producing Serratia surfactantfaciens (S31) and Alcaligenes pakistanensis (S33) isolated from the Solanum lycopersicum rhizosphere	Masood AB, Badshah M, Ali MI, Masood K, Jamal A, Nicolaisen M.	Physiol Mol Plant Pathol		2025
	Isolation of high yield polyhydroxyalkanoate producing bacteria from contaminated soils and biopolymer characterization.	Salam MA, Hussain A, Uzma, Bogale A, Iqbal Z.	Sci Rep	10.1038/s41598-025-29352-0	2025
Enzymology	Isolation and Characterization of Highly Active Uricase from Alcaligenes spp. Strain UR1.	Alshareef A, El-Readi MZ, Neyaz LA, Abulreesh HH, Alsaigh AA, Khalel AF, Alshehri WA, Elbanna K.	Pol J Microbiol	10.33073/pjm-2025-009	2025
	Molecular characterization of heavy metal-tolerant bacteria and their potential for bioremediation and plant growth promotion.	Abbas S, Zulfiqar S, Arshad M, Khalid N, Hussain A, Ahmed I.	Front Microbiol	10.3389/fmicb.2025.1644466	2025
	Genetic Foundations of Direct Ammonia Oxidation (Dirammox) to N₂ and MocR-Like Transcriptional Regulator DnfR in Alcaligenes faecalis Strain JQ135.	Xu SQ, Qian XX, Jiang YH, Qin YL, Zhang FY, Zhang KY, Hong Q, He J, Miao LL, Liu ZP, Li DF, Liu SJ, Qiu JG.	Appl Environ Microbiol	10.1128/aem.02261-21	2022
Phylogeny	A heavy-metal tolerant novel bacterium, Alcaligenes pakistanensis sp. nov., isolated from industrial effluent in Pakistan.	Abbas S, Ahmed I, Iida T, Lee YJ, Busse HJ, Fujiwara T, Ohkuma M	Antonie Van Leeuwenhoek	10.1007/s10482-015-0540-1	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alcaligenes pakistanensis (NCCP 650, LMG 28368, KCTC 42083)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014652815

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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