Name: Halolamina sediminis JCM 30187
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163733

Type strain:

Species: Halolamina sediminis

Culture col. no.: JCM 30187, CECT 8739

Strain history: S.-J. Park; Jeju Natl. Univ., South Korea; halo-7.

NCBI tax ID(s): 1480675 (species)

Section

Halolamina sediminis JCM 30187 is a thermophilic archaeon that was isolated from Brine sediment of the Gomso solar saltern.

thermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Halorubraceae*
	Genus	*Halolamina*
	Species	**Halolamina sediminis**
	Full Scientific Name (LPSN)	Halolamina sediminis Koh et al. 2015

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	40 °C

[Ref.: #67770]

Temperature range

thermophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Brine sediment of the Gomso solar saltern
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halolamina sediminis strain halo-7 16S ribosomal RNA gene, partial sequence	KJ573433	1470	ENA	1480675 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halolamina sediminis halo7	GCA_001282785	contig	GenBank	1480675 tax ID

[Ref.: #67770]

GC-content

68 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halolamina sediminis halo7 NCBI: GCA_001282785.1
[Ref.: #69480]	motile	no	78.505	no
[Ref.: #69480]	flagellated	no	97.872	no
[Ref.: #69480]	gram-positive	no	96.895	no
[Ref.: #69480]	anaerobic	no	96.572	no
[Ref.: #69480]	halophile	yes	92.136	no
[Ref.: #69480]	spore-forming	no	96.399	no
[Ref.: #69480]	glucose-util	yes	84.661	no
[Ref.: #69480]	aerobic	yes	82.892	no
[Ref.: #69480]	thermophile	no	78.999	yes
[Ref.: #69480]	glucose-ferment	no	87.351	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30187, CECT 8739

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halolamina sediminis sp. nov., an extremely halophilic archaeon isolated from solar salt.	Koh HW, Song HS, Song U, Yim KJ, Roh SW, Park SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.000287	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Halolamina sediminis halo7

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