Name: Sphingorhabdus buctiana JCM 30114
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163712

Type strain:

Species: Sphingorhabdus buctiana

Culture col. no.: JCM 30114, CGMCC 1.12929

Strain history: J. Lv; Beijing Univ. of Chem. Technol., China; T5.

NCBI tax ID(s): 1508805 (species)

Section

Sphingorhabdus buctiana JCM 30114 is a mesophilic bacterium that was isolated from Fresh water of the Chishui River in Maotai Town.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingorhabdus*
	Species	**Sphingorhabdus buctiana**
	Full Scientific Name (LPSN)	Sphingorhabdus buctiana Chen et al. 2018

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Fresh water of the Chishui River in Maotai Town
[Ref.: #67770]	Geographic location (country and/or sea, region)	Guizhou Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KJ667149 (>99% sequence identity) for Sphingorhabdus buctiana subclade from Microbeatlas

Aquatic Samples	3017
Soil Samples	374
Animal Samples	213
Plant Samples	247
Total Samples	3851

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sphingorhabdus buctiana strain T5 16S ribosomal RNA gene, partial sequence	KJ667149	1451	ENA	1508805 tax ID

[Ref.: #67770]

GC-content

58.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30114, CGMCC 1.12929

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingorhabdus buctiana sp. nov., isolated from fresh water, and reclassification of Sphingopyxis contaminans as Sphingorhabdus contaminans comb. nov.	Chen H, Piao AL, Tan X, Nogi Y, Yeo J, Lu H, Feng QQ, Lv J	Antonie Van Leeuwenhoek	10.1007/s10482-017-0954-z	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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