Name: Dyadobacter sediminis JCM 30073
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163701

Type strain:

Species: Dyadobacter sediminis

Culture col. no.: JCM 30073, CGMCC 1.12895

Strain history: J. Lv; Beijing Univ. of Chem. Technol., China; Z12.

NCBI tax ID(s): 1493691 (species)

Section

Dyadobacter sediminis JCM 30073 is a mesophilic bacterium that was isolated from Subterrestrial sediment from a borehole.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Spirosomataceae*
	Genus	*Dyadobacter*
	Species	**Dyadobacter sediminis**
	Full Scientific Name (LPSN)	Dyadobacter sediminis Tian et al. 2015

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Subterrestrial sediment from a borehole
[Ref.: #67770]	Geographic location (country and/or sea, region)	lying in the Mohe Basin, north-east China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KJ473428 (>99% sequence identity) for Dyadobacter sediminis from Microbeatlas

Aquatic Samples	17
Soil Samples	13
Animal Samples	39
Plant Samples	30
Total Samples	99

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Dyadobacter sediminis strain Z12 16S ribosomal RNA gene, partial sequence	KJ473428	1472	ENA	1493691 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Dyadobacter sediminis CGMCC 1.12895	GCA_014640015	contig	GenBank	1493691 tax ID	*
[Ref.: #66792]	Dyadobacter sediminis strain CGMCC 1.12895	1493691.4	wgs	PATRIC	1493691 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Dyadobacter sediminis strain CGMCC 1.12895 PATRIC: 1493691.4
[Ref.: #69480]	motile	no	93.684	no
[Ref.: #69480]	gram-positive	no	97.261	no
[Ref.: #69480]	anaerobic	no	99.543	no
[Ref.: #69480]	aerobic	yes	91.842	no
[Ref.: #69480]	halophile	no	93.852	no
[Ref.: #69480]	spore-forming	no	94.08	no
[Ref.: #69480]	thermophile	no	99.074	no
[Ref.: #69480]	glucose-util	yes	89.473	no
[Ref.: #69480]	flagellated	no	97.722	no
[Ref.: #69480]	glucose-ferment	no	89.738	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30073, CGMCC 1.12895

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dyadobacter flavalbus sp. nov., isolated from lake sediment.	Qu JH, Yue YF, Zhou J, Qu LB, Wang LF	Int J Syst Evol Microbiol	10.1099/ijsem.0.003876	2020	*
Phylogeny	Dyadobacter sediminis sp. nov., isolated from a subterranean sediment sample.	Tian M, Zhang RG, Han L, Zhao XM, Lv J	Int J Syst Evol Microbiol	10.1099/ijs.0.000025	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Dyadobacter sediminis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Dyadobacter sediminis strain CGMCC 1.12895

Change proposal

Change proposal