Name: Salinicoccus sediminis JCM 30061
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163699

Type strain:

Species: Salinicoccus sediminis

Culture col. no.: JCM 30061, DSM 28797, MTCC 11832

Strain history: S. Mayilraj SV-16.

NCBI tax ID(s): 1432562 (species)

Section

Salinicoccus sediminis JCM 30061 is a mesophilic bacterium that was isolated from Marine sediment at a depth of 12.5 m from Sothavilai.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Salinicoccus*
	Species	**Salinicoccus sediminis**
	Full Scientific Name (LPSN)	Salinicoccus sediminis Kumar et al. 2015

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Marine sediment at a depth of 12.5 m from Sothavilai
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kanyakumari, Bay of Bengal coast
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KF701618 (>99% sequence identity) for Salinicoccus sediminis from Microbeatlas

Aquatic Samples	40
Soil Samples	27
Animal Samples	346
Plant Samples	20
Total Samples	433

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Salinicoccus sediminis strain SV-16 16S ribosomal RNA gene, partial sequence	KF701618	1453	ENA	1432562 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Salinicoccus sediminis SV-16	GCA_000986795	contig	GenBank	1432562 tax ID

[Ref.: #67770]

GC-content

48.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salinicoccus sediminis SV-16 NCBI: GCA_000986795.1
[Ref.: #69480]	motile	no	88.915	no
[Ref.: #69480]	flagellated	no	91.664	no
[Ref.: #69480]	gram-positive	yes	92.479	no
[Ref.: #69480]	anaerobic	no	99.169	no
[Ref.: #69480]	aerobic	yes	97.391	no
[Ref.: #69480]	halophile	yes	96.966	no
[Ref.: #69480]	spore-forming	no	88.486	no
[Ref.: #69480]	thermophile	no	98.784	yes
[Ref.: #69480]	glucose-util	yes	90.191	no
[Ref.: #69480]	glucose-ferment	no	54.592	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30061, DSM 28797, MTCC 11832

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taxonomic description and genome sequence of Salinicoccus sediminis sp. nov., a halotolerant bacterium isolated from marine sediment.	Kumar RM, Kaur G, Kumar N, Kumar A, Singh NK, Bala M, Kaur N, Mayilraj S	Int J Syst Evol Microbiol	10.1099/ijsem.0.000495	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Salinicoccus sediminis SV-16

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