Name: Streptomyces echinoruber DSM 41696
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16335

Type strain:

Species: Streptomyces echinoruber

Culture col. no.: DSM 41696, IFO 14238, JCM 5016, KCC S-0516, NBRC 14238, NCIMB 12831, NRRL 8144, BCRC 16859, CGMCC 4.1707, KCTC 9725, KCTC 9776

Strain history: KCC S-1016 <-- NRRL 8144 <-- Hoffmann-La Roche Inc.; X14077.

NCBI tax ID(s): 68898 (species)

SI-ID 307492

DSM 41696, IFO 14238, JCM 5016, NCIMB 12831, NRRL 8144, KCTC 9725, KCTC 9776, AS 4.1707, NBRC 14238, BCRC 16859, CCRC 16859, CGMCC 4.1707

Section

Streptomyces echinoruber DSM 41696 is a spore-forming, mesophilic, Gram-positive bacterium that builds an aerial mycelium and was isolated from soil.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces echinoruber**
	Full Scientific Name (LPSN)	Streptomyces echinoruber Palleroni et al. 1981

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #18713]	Colony color	Red
[Ref.: #18713]	Incubation period	10-14 days
[Ref.: #18713]	Cultivation medium used	ISP 2

[Ref.: #18713]	Colony color	Red
[Ref.: #18713]	Incubation period	10-14 days
[Ref.: #18713]	Cultivation medium used	ISP 3

[Ref.: #18713]	Colony color	Red
[Ref.: #18713]	Incubation period	10-14 days
[Ref.: #18713]	Cultivation medium used	ISP 4

[Ref.: #18713]	Colony color	Red
[Ref.: #18713]	Incubation period	10-14 days
[Ref.: #18713]	Cultivation medium used	ISP 5

[Ref.: #18713]	Colony color	Brown
[Ref.: #18713]	Incubation period	10-14 days
[Ref.: #18713]	Cultivation medium used	ISP 6

[Ref.: #18713]	Multicellular complex forming ability	yes
[Ref.: #18713]	Multicellular complex name	Aerial Mycelium
[Ref.: #18713]	Multicellular complex color	Grey
[Ref.: #18713]	Medium Name (multicellularity)	ISP 2

[Ref.: #18713]	Multicellular complex forming ability	yes
[Ref.: #18713]	Multicellular complex name	Aerial Mycelium
[Ref.: #18713]	Multicellular complex color	Grey
[Ref.: #18713]	Medium Name (multicellularity)	ISP 3

[Ref.: #18713]	Multicellular complex forming ability	yes
[Ref.: #18713]	Multicellular complex name	Aerial Mycelium
[Ref.: #18713]	Multicellular complex color	Grey
[Ref.: #18713]	Medium Name (multicellularity)	ISP 4

[Ref.: #18713]	Multicellular complex forming ability	yes
[Ref.: #18713]	Multicellular complex name	Aerial Mycelium
[Ref.: #18713]	Multicellular complex color	White
[Ref.: #18713]	Medium Name (multicellularity)	ISP 5

[Ref.: #18713]	Multicellular complex forming ability	no
[Ref.: #18713]	Medium Name (multicellularity)	ISP 6

[Ref.: #18713]	Multicellular complex forming ability	yes
[Ref.: #18713]	Multicellular complex name	Aerial Mycelium
[Ref.: #18713]	Multicellular complex color	Grey
[Ref.: #18713]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium

ISP 6

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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		Temperature
[Ref.: #10478]	growth	28 °C
[Ref.: #18713]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #10478]	Temperature range	mesophilic
[Ref.: #18713]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #18713]	Spore description	Formation of spore chains (retinaculiapetri), spore surface spiny
[Ref.: #18713]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #10478]	Name of produced compound	rubrolone
[Ref.: #18713]	Name of produced compound	Rubrolone

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18713]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E

	Metabolite	Production
[Ref.: #67770]	rubrolone ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18713]	217	+	+	-	-	-	-	-	+	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10478]	Sample type/isolated from	soil
[Ref.: #10478]	Country	Argentina
[Ref.: #10478]	Country ISO 3 Code	ARG
[Ref.: #10478]	Continent	Middle and South America

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Argentina
[Ref.: #67770]	Country ISO 3 Code	ARG
[Ref.: #67770]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18713]	Biosafety level	1	German classification
[Ref.: #10478]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces echinoruber gene for 16S ribosomal RNA, partial sequence, strain: JCM 5016	D44426	120	ENA	68898 tax ID	*
[Ref.: #20218]	Streptomyces echinoruber strain NBRC 14238 16S ribosomal RNA gene, partial sequence	KC139252	1466	ENA	68898 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces echinoruber JCM 5016	GCA_014651135	scaffold	GenBank	68898 tax ID	*
[Ref.: #66792]	Streptomyces echinoruber strain JCM 5016	68898.3	wgs	PATRIC	68898 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces echinoruber JCM 5016 NCBI: GCA_014651135.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces echinoruber JCM 5016 NCBI: GCA_014651135.1
[Ref.: #69480]	flagellated	no	97.971	no
[Ref.: #69480]	gram-positive	yes	92.571	no
[Ref.: #69480]	anaerobic	no	98.936	no
[Ref.: #69480]	aerobic	yes	88.944	no
[Ref.: #69480]	halophile	no	92.563	no
[Ref.: #69480]	spore-forming	yes	96.558	no
[Ref.: #69480]	thermophile	no	95.697	yes
[Ref.: #69480]	glucose-util	yes	88.645	no
[Ref.: #69480]	motile	no	92.951	no
[Ref.: #69480]	glucose-ferment	no	90.075	no

Availability in culture collections External links

[Ref.: #10478]

Culture collection no.

DSM 41696, IFO 14238, JCM 5016, KCC S-0516, NBRC 14238, NCIMB 12831, NRRL 8144, BCRC 16859, CGMCC 4.1707, KCTC 9725, KCTC 9776

[Ref.: #85390]

SI-ID 307492

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Production of a novel red pigment, rubrolone, by Streptomyces echinoruber sp. nov. I. Taxonomy, fermentation and partial purification.	Palleroni NJ, Reichelt KE, Mueller D, Epps R, Tabenkin B, Bull DN, Schuep W, Berger J	J Antibiot (Tokyo)	10.7164/antibiotics.31.1218	1978	*

References

#10478

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41696

#18713

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85390

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID307492.1 )

* These data were automatically processed and therefore are not curated

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