Name: Streptomyces capillispiralis MS 1486
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16334

Type strain:

Species: Streptomyces capillispiralis

Strain Designation: MS 1486

Culture col. no.: DSM 41695, IFO 14222, JCM 5075, KCC S-1075, NBRC 14222, NCIMB 12832, NRRL 12279, BCRC 16852, CGMCC 4.1945, KCTC 1719

Strain history: KCC S-1075 <-- MS 1486 <-- NRRL 12279 <-- Eli Lilly & Co.; A49492.

NCBI tax ID(s): 68182 (species)

SI-ID 50053

DSM 41695, IFO 14222, JCM 5075, NCIMB 12832, NRRL 12279, KCTC 1719, NBRC 14222, KACC 20004, BCRC 16852, CCRC 16852, CGMCC 4.1945

Other strains from Streptomyces capillispiralis

S. capillispiralis C 17, DSM 101027

Section

Streptomyces capillispiralis MS 1486 is a spore-forming, mesophilic, Gram-positive bacterium that builds an aerial mycelium and was isolated from soil.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces capillispiralis**
	Full Scientific Name (LPSN)	Streptomyces capillispiralis Mertz and Higgens 1982

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #19527]	Colony color	Red brown
[Ref.: #19527]	Incubation period	10-14 days
[Ref.: #19527]	Cultivation medium used	ISP 2

[Ref.: #19527]	Colony color	Brown
[Ref.: #19527]	Incubation period	10-14 days
[Ref.: #19527]	Cultivation medium used	ISP 3

[Ref.: #19527]	Colony color	Red brown
[Ref.: #19527]	Incubation period	10-14 days
[Ref.: #19527]	Cultivation medium used	ISP 5

[Ref.: #19527]	Colony color	Brown
[Ref.: #19527]	Incubation period	10-14 days
[Ref.: #19527]	Cultivation medium used	ISP 7

[Ref.: #19527]	Incubation period	10-14 days
[Ref.: #19527]	Cultivation medium used	ISP 4

[Ref.: #19527]	Incubation period	10-14 days
[Ref.: #19527]	Cultivation medium used	ISP 6

[Ref.: #19527]	Multicellular complex forming ability	yes
[Ref.: #19527]	Multicellular complex name	Aerial Mycelium
[Ref.: #19527]	Multicellular complex color	Grey
[Ref.: #19527]	Medium Name (multicellularity)	ISP 2

[Ref.: #19527]	Multicellular complex forming ability	yes
[Ref.: #19527]	Multicellular complex name	Aerial Mycelium
[Ref.: #19527]	Multicellular complex color	Grey
[Ref.: #19527]	Medium Name (multicellularity)	ISP 3

[Ref.: #19527]	Multicellular complex forming ability	yes
[Ref.: #19527]	Multicellular complex name	Aerial Mycelium
[Ref.: #19527]	Multicellular complex color	Dark grey
[Ref.: #19527]	Medium Name (multicellularity)	ISP 4

[Ref.: #19527]	Multicellular complex forming ability	yes
[Ref.: #19527]	Multicellular complex name	Aerial Mycelium
[Ref.: #19527]	Multicellular complex color	White
[Ref.: #19527]	Medium Name (multicellularity)	ISP 5

[Ref.: #19527]	Multicellular complex forming ability	no
[Ref.: #19527]	Medium Name (multicellularity)	ISP 6

[Ref.: #19527]	Multicellular complex forming ability	yes
[Ref.: #19527]	Multicellular complex name	Aerial Mycelium
[Ref.: #19527]	Multicellular complex color	White
[Ref.: #19527]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19527]

Culture medium

ISP 2

[Ref.: #19527]

Culture medium growth

[Ref.: #19527]

Culture medium composition

expand / minimize

[Ref.: #19527]

Culture medium

ISP 3

[Ref.: #19527]

Culture medium growth

[Ref.: #19527]

Culture medium composition

expand / minimize

[Ref.: #19527]

Culture medium

ISP 4

[Ref.: #19527]

Culture medium growth

[Ref.: #19527]

Culture medium composition

expand / minimize

[Ref.: #19527]

Culture medium

ISP 5

[Ref.: #19527]

Culture medium growth

[Ref.: #19527]

Culture medium composition

expand / minimize

[Ref.: #19527]

Culture medium

ISP 6

[Ref.: #19527]

Culture medium growth

[Ref.: #19527]

Culture medium composition

expand / minimize

[Ref.: #19527]

Culture medium

ISP 7

[Ref.: #19527]

Culture medium growth

[Ref.: #19527]

Culture medium composition

expand / minimize

[Ref.: #10477]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10477]

Culture medium growth

[Ref.: #10477]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10477]

Culture medium composition

expand / minimize

[Ref.: #10477]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #10477]

Culture medium growth

[Ref.: #10477]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10477]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #10477]	growth	28 °C
[Ref.: #19527]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #10477]	Temperature range	mesophilic
[Ref.: #19527]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19527]	Spore description	Formation of spore chains: spirales, spore surface: knobby
[Ref.: #19527]	Type of spore	spore
[Ref.: #19527]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #10477]	Name of produced compound	cephalosporin-C4-carboxymethyl-esterase
[Ref.: #67770]	Name of produced compound	Cephalosporin C-4 carboxymethyl esterase

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19527]	384	+	+	+	+	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10477]	Sample type/isolated from	soil
[Ref.: #10477]	Country	Sweden
[Ref.: #10477]	Country ISO 3 Code	SWE
[Ref.: #10477]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Sweden
[Ref.: #67770]	Country ISO 3 Code	SWE
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY999816 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	2
Soil Samples	112
Animal Samples	49
Plant Samples	3
Total Samples	166

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10477]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19527]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces capillispiralis gene for 16S ribosomal RNA, partial sequence, strain: JCM 5075	D44439	121	ENA	68182 tax ID	*
[Ref.: #20218]	Streptomyces capillispiralis strain KCTC 1719 16S ribosomal RNA gene, partial sequence	AY999816	1419	ENA	68182 tax ID	*
[Ref.: #20218]	Streptomyces capillispiralis gene for 16S rRNA, partial sequence, strain: NBRC 14222	AB184577	1469	ENA	68182 tax ID	*
[Ref.: #20218]	Streptomyces stramineus strain NRRL 12279 16S ribosomal RNA gene, partial sequence	AY999907	1450	ENA	173861 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces capillispiralis DSM 41695	GCA_007829875	contig	GenBank	68182 tax ID	*
[Ref.: #66792]	Streptomyces capillispiralis JCM 5075	GCA_014656315	scaffold	GenBank	68182 tax ID	*
[Ref.: #66792]	Streptomyces capillispiralis strain DSM 41695	68182.3	wgs	PATRIC	68182 tax ID	*
[Ref.: #66792]	Streptomyces capillispiralis strain JCM 5075	68182.4	wgs	PATRIC	68182 tax ID	*
[Ref.: #66792]	Streptomyces capillispiralis DSM 41695	2818991476	draft	JGI IMG/M	68182 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces capillispiralis strain JCM 5075 PATRIC: 68182.4
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces capillispiralis JCM 5075 NCBI: GCA_014656315.1
[Ref.: #69480]	flagellated	no	97.926	no
[Ref.: #69480]	gram-positive	yes	85.248	no
[Ref.: #69480]	anaerobic	no	99.038	no
[Ref.: #69480]	aerobic	yes	94.387	no
[Ref.: #69480]	halophile	no	90.881	no
[Ref.: #69480]	spore-forming	yes	94.98	yes
[Ref.: #69480]	thermophile	no	98.126	yes
[Ref.: #69480]	glucose-util	yes	90.903	no
[Ref.: #69480]	motile	no	93.958	no
[Ref.: #69480]	glucose-ferment	no	90.951	no

Availability in culture collections External links

[Ref.: #10477]

Culture collection no.

DSM 41695, IFO 14222, JCM 5075, KCC S-1075, NBRC 14222, NCIMB 12832, NRRL 12279, BCRC 16852, CGMCC 4.1945, KCTC 1719

[Ref.: #85389]

SI-ID 50053

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces andamanensis sp. nov., isolated from soil.	Sripreechasak P, Tamura T, Shibata C, Suwanborirux K, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.000987	2016	*

References

#10477

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41695

#19527

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85389

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID50053.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces capillispiralis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Streptomyces capillispiralis strain JCM 5075

Streptomyces capillispiralis JCM 5075

Change proposal

Change proposal