Name: Paracoccus zeaxanthinifaciens JCM 21774
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163247

Type strain:

Species: Paracoccus zeaxanthinifaciens

Culture col. no.: JCM 21774, ATCC 21588, IAM 15326, LMG 21293

Strain history: IAM 15326 <-- LMG 21293 <-- ATCC 21588 <-- Hoffmann-La Roche Ltd., R-1512.

NCBI tax ID(s): 1266998 (strain), 187400 (species)

SI-ID 37612

ATCC 21588, LMG 21293, JCM 21774, IAM 15326, CIP 108019

Section

Paracoccus zeaxanthinifaciens JCM 21774 is a mesophilic, Gram-negative bacterium that was isolated from Seaweed from the coast of the African Red Sea.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Paracoccus*
	Species	**Paracoccus zeaxanthinifaciens**
	Full Scientific Name (LPSN)	Paracoccus zeaxanthinifaciens Berry et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.997

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Seaweed from the coast of the African Red Sea
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paracoccus zeaxanthinifaciens strain ATCC 21588 16S ribosomal RNA gene, partial sequence	AF461158	1404	ENA	187400 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paracoccus zeaxanthinifaciens ATCC 21588	GCA_000420145	contig	GenBank	1266998 tax ID
[Ref.: #66792]	Paracoccus zeaxanthinifaciens ATCC 21588	1266998.3	wgs	PATRIC	1266998 tax ID	*
[Ref.: #66792]	Paracoccus zeaxanthinifaciens ATCC 21588	2524614865	draft	JGI IMG/M	1266998 tax ID	*
[Ref.: #66792]	Paracoccus rhizosphaerae LMG 21293	GCA_026162645	contig	GenBank	1133347 tax ID	*

[Ref.: #67770]

GC-content

67.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paracoccus zeaxanthinifaciens ATCC 21588 PATRIC: 1266998.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paracoccus zeaxanthinifaciens ATCC 21588 PATRIC: 1266998.3
[Ref.: #69480]	motile	no	65.152	no
[Ref.: #69480]	gram-positive	no	98.221	no
[Ref.: #69480]	anaerobic	no	98.527	no
[Ref.: #69480]	aerobic	yes	93.823	no
[Ref.: #69480]	halophile	yes	59.211	no
[Ref.: #69480]	spore-forming	no	96.324	no
[Ref.: #69480]	thermophile	no	95.054	yes
[Ref.: #69480]	glucose-util	yes	90.53	no
[Ref.: #69480]	flagellated	no	88.012	no
[Ref.: #69480]	glucose-ferment	no	86.622	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 21774, ATCC 21588, IAM 15326, LMG 21293

[Ref.: #113986]

SI-ID 37612

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paracoccus amoyensis sp. nov., isolated from the surface seawater along the coast of Xiamen Island, China.	Lyu L, Lai Q, Li J, Yu Z, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.004685	2021	*
Phylogeny	Paracoccus pueri sp. nov., isolated from Pu'er tea.	Wang YS, Yan ZF, Lin P, Gao W, Yi TH	Antonie Van Leeuwenhoek	10.1007/s10482-018-1041-9	2018	*
Phylogeny	Paracoccus beibuensis sp. nov., isolated from the South China Sea.	Zheng Q, Wang Y, Chen C, Wang Y, Xia X, Fu Y, Zhang R, Jiao N	Curr Microbiol	10.1007/s00284-010-9768-1	2010	*
Phylogeny	Paracoccus caeni sp. nov., isolated from sludge.	Lee M, Woo SG, Park G, Kim MK	Int J Syst Evol Microbiol	10.1099/ijs.0.017897-0	2010	*
Phylogeny	Paracoccus fistulariae sp. nov., a lipolytic bacterium isolated from bluespotted cornetfish, Fistularia commersonii.	Kim YO, Kong HJ, Park S, Kang SJ, Kim KK, Moon DY, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.021808-0	2010	*
Phylogeny	Paracoccus homiensis sp. nov., isolated from a sea-sand sample.	Kim BY, Weon HY, Yoo SH, Kwon SW, Cho YH, Stackebrandt E, Go SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64275-0	2006	*
Phylogeny	Paracoccus zeaxanthinifaciens sp. nov., a zeaxanthin-producing bacterium.	Berry A, Janssens D, Humbelin M, Jore JPM, Hoste B, Cleenwerck I, Vancanneyt M, Bretzel W, Mayer AF, Lopez-Ulibarri R, Shanmugam B, Swings J, Pasamontes L	Int J Syst Evol Microbiol	10.1099/ijs.0.02368-0	2003	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113986

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID37612.1 )

* These data were automatically processed and therefore are not curated

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Paracoccus zeaxanthinifaciens ATCC 21588

Paracoccus zeaxanthinifaciens ATCC 21588

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