Name: Rhizobium daejeonense JCM 21504
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163211

Type strain:

Species: Rhizobium daejeonense

Culture col. no.: JCM 21504, IAM 15041, KCTC 12120, NBRC 102494

Strain history: IAM 15041 <-- Z.-X. Quan L22.

NCBI tax ID(s): 240521 (species)

SI-ID 107105

KCTC 12120, IAM 15041, JCM 21504, NBRC 102494

Other strains from Rhizobium daejeonense

R. daejeonense L61, DSM 17795, JCM 21505, BCRC ... (type strain)

Section

Rhizobium daejeonense JCM 21504 is a mesophilic bacterium that was isolated from Cyanide degrading bioreactor.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Species	**Rhizobium daejeonense**
	Full Scientific Name (LPSN)	Rhizobium daejeonense Quan et al. 2005

	Synonym	"Ciceribacter* daejeonensis"*
	Synonym	"Paenirhizobium* daejeonense"*

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Cyanide degrading bioreactor
[Ref.: #67770]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence DQ089696 (>99% sequence identity) for Rhizobium from Microbeatlas

Aquatic Samples	59
Soil Samples	69
Animal Samples	18
Plant Samples	180
Total Samples	326

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rhizobium daejeonense strain L22 16S ribosomal RNA gene, partial sequence	DQ089696	1396	ENA	240521 tax ID

[Ref.: #67770]

GC-content

60.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 21504, IAM 15041, KCTC 12120, NBRC 102494

[Ref.: #113957]

SI-ID 107105

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#113957

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID107105.1 )

* These data were automatically processed and therefore are not curated

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