Streptomyces asoensis (DSM 41440, ATCC 19093, CBS 378.69)

Name: Streptomyces asoensis (DSM 41440, ATCC 19093, CBS 378.69)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16300

Type strain

Culture col. no. DSM 41440 ATCC 19093 CBS 378.69 IFO 13813 JCM 4185 7 more

NCBI tax ID(s) 249586

Special Collections DSMZ JCM KCTC

History DSMZ <- KCC <- S. Suzuki, 20-60 JCM <-- KCC S-0185 <-- S. Suzuki 20-60.

Links

Streptomyces asoensis DSM 41440 is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 36846

ATCC 19093,DSM 41440,IFO 13813,JCM 4185,NCIB 12769,NRRL B-16592,NCIMB 12769,KCTC 9700,AS 4.1602,NBRC 13813,CGMCC 4.1602,CBS 378.69

@ref 20215

Last LPSN update 2026-05-29 08:28:45

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces asoensis

Full scientific name Streptomyces asoensis (Isono et al. 1965) Komaki and Tamura 2021

Synonyms (1)

Streptomyces cacaoi subsp. asoensis

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	90.458
125439		92.681
125439	positive	99.127

Multimedia

@ref:	10305
multimedia content:	DSM_41440.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_41440.jpg
caption:	Medium 84 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
10305	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10305	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10305	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
10305	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
10305	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.745

Spore formation

@ref	Spore formation	Confidence
125439		91.367
125438		92.041

Compound production

10305

Compoundpolyoxins

Metabolite production

@ref	Chebi-ID	Metabolite	Production
67770	26194 ChEBI	polyoxin

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
10305	soil	Kumamoto Pref., Aso district	Japan	JPN	Asia
67770	Soil	Aso district, Kumamoto Pref.	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB184502 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	88
Soil Samples	2400
Animal Samples	99
Plant Samples	1803
Total Samples	4390

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10305	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Streptomyces cacaoi asoensis ATCC 19093	complete			2582581442	249586	99.49
66792	ASM1686054v1 assembly for Streptomyces asoensis NBRC 13813	contig	GCA_016860545	249586.6	8110427440	249586	78.51
66792	ASM1464907v1 assembly for Streptomyces asoensis JCM 4185	scaffold	GCA_014649075	249586.5	8110861319	249586	64.68

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces cacaoi subsp. asoensis gene for 16S rRNA, partial sequence	AB122779	564	249586
20218	Streptomyces cacaoi subsp. asoensis gene for 16S rRNA, partial sequence, strain: NBRC 13813	AB184502	1479	249586
20218	Streptomyces asoensis strain NRRL B-16592 16S ribosomal RNA gene, partial sequence	DQ026644	1493	249586
124043	Streptomyces cacaoi subsp. asoensis strain JCM 4185 16S ribosomal RNA gene, partial sequence.	MT760493	1332	249586

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1686054v1 assembly for Streptomyces asoensis NBRC 13813
BV-BRC: 249586.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.75	no
125439	gram_stain	BacteriaNetⓘ	positive	99.13	no
125439	spore_formation	BacteriaNetⓘ	yes	91.37	no
125439	motility	BacteriaNetⓘ	no	92.68	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces cacaoi subsp. asoensis strain JCM 4185
PATRIC: 249586.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.46	no
125438	anaerobic	anaerobicⓘ	no	96.34	no
125438	spore-forming	spore-formingⓘ	yes	92.04	no
125438	thermophilic	thermophileⓘ	no	96.50	yes
125438	aerobic	aerobicⓘ	yes	88.69	no
125438	flagellated	motile2+ⓘ	no	88.00	no

Literature

References

#10305	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41440
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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