Streptomyces ruber | Type strain | DSM 40304, ATCC 17754, CBS 228.65, IFO 14600, ISP 5304, JCM 3131, KCC A-0131, NBRC 14600, NCIB 10983

Strain identifier

BacDive ID: 16298

Type strain:

Species: Streptomyces ruber

Culture col. no.: DSM 40304, ATCC 17754, CBS 228.65, IFO 14600, ISP 5304, JCM 3131, KCC A-0131, NBRC 14600, NCIB 10983

Strain history: <- E. B. Shirling, ISP (Chainia rubra) <- M. J. Thirumlachar, HACC-143

Section

Name and taxonomic classification
Morphology
Culture and growth conditions
Physiology and metabolism
Safety information
Sequence information

External links

Streptomyces ruber DSM 40304 is a spore-forming, mesophilic bacterium that builds an aerial mycelium.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Actinobacteria
	Class	Actinobacteria
	Order	Streptomycetales
	Family	Streptomycetaceae
	Genus	Streptomyces
	Species	Streptomyces ruber
	Full Scientific Name (PNU)	Streptomyces ruber (Thirumalachar 1955) Goodfellow et al. 1986

Synonym

Chainia rubra

Information on morphological and physiological propertiesMorphology

[Ref.: #19435]	Colony color	Red brown
[Ref.: #19435]	Incubation period	10-14 days
[Ref.: #19435]	Cultivation medium used	ISP 2

[Ref.: #19435]	Colony color	Red
[Ref.: #19435]	Incubation period	10-14 days
[Ref.: #19435]	Cultivation medium used	ISP 3

[Ref.: #19435]	Colony color	Orange
[Ref.: #19435]	Incubation period	10-14 days
[Ref.: #19435]	Cultivation medium used	ISP 4

[Ref.: #19435]	Colony color	Red brown
[Ref.: #19435]	Incubation period	10-14 days
[Ref.: #19435]	Cultivation medium used	ISP 5

[Ref.: #19435]	Colony color	Orange
[Ref.: #19435]	Incubation period	10-14 days
[Ref.: #19435]	Cultivation medium used	ISP 6

[Ref.: #19435]	Colony color	Red brown
[Ref.: #19435]	Incubation period	10-14 days
[Ref.: #19435]	Cultivation medium used	ISP 7

[Ref.: #19435]	Multicellular complex forming ability	yes
[Ref.: #19435]	Multicellular complex name	Aerial Mycelium
[Ref.: #19435]	Multicellular complex color	Red brown
[Ref.: #19435]	Medium Name (multicellularity)	ISP 2

[Ref.: #19435]	Multicellular complex forming ability	yes
[Ref.: #19435]	Multicellular complex name	Aerial Mycelium
[Ref.: #19435]	Multicellular complex color	Red
[Ref.: #19435]	Medium Name (multicellularity)	ISP 3

[Ref.: #19435]	Multicellular complex forming ability	yes
[Ref.: #19435]	Multicellular complex name	Aerial Mycelium
[Ref.: #19435]	Multicellular complex color	Red
[Ref.: #19435]	Medium Name (multicellularity)	ISP 4

[Ref.: #19435]	Multicellular complex forming ability	yes
[Ref.: #19435]	Multicellular complex name	Aerial Mycelium
[Ref.: #19435]	Multicellular complex color	Red
[Ref.: #19435]	Medium Name (multicellularity)	ISP 5

[Ref.: #19435]	Multicellular complex forming ability	no
[Ref.: #19435]	Medium Name (multicellularity)	ISP 6

[Ref.: #19435]	Multicellular complex forming ability	yes
[Ref.: #19435]	Multicellular complex name	Aerial Mycelium
[Ref.: #19435]	Multicellular complex color	Red
[Ref.: #19435]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #9446]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9446]

Culture medium growth

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Culture medium link

medium recipe provided by DSMZ

[Ref.: #19435]

Culture medium

ISP 2

[Ref.: #19435]

Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 3

[Ref.: #19435]

Culture medium growth

[Ref.: #19435]

Culture medium composition

expand / minimize

[Ref.: #19435]

Culture medium

ISP 4

[Ref.: #19435]

Culture medium growth

[Ref.: #19435]

Culture medium composition

expand / minimize

[Ref.: #19435]

Culture medium

ISP 5

[Ref.: #19435]

Culture medium growth

[Ref.: #19435]

Culture medium composition

expand / minimize

[Ref.: #19435]

Culture medium

ISP 6

[Ref.: #19435]

Culture medium growth

[Ref.: #19435]

Culture medium composition

expand / minimize

[Ref.: #19435]

Culture medium

ISP 7

[Ref.: #19435]

Culture medium growth

[Ref.: #19435]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9446]			growth	28 ̊C
[Ref.: #19435]			optimum	28 ̊C

[Ref.: #9446]	Temperature range	mesophilic
[Ref.: #19435]	Temperature range	mesophilic

Information on physiology and metabolismPhysiology and metabolism

[Ref.: #19435]	Spore description	Formation of spore chains: spira, spore surface: smooth
[Ref.: #19435]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19435]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity
[Ref.: #19435]	arabinose ChEBI	-
[Ref.: #19435]	cellulose ChEBI	-
[Ref.: #19435]	fructose ChEBI	+/-
[Ref.: #19435]	glucose ChEBI	+
[Ref.: #19435]	mannitol ChEBI	+
[Ref.: #19435]	myo-inositol ChEBI	-
[Ref.: #19435]	raffinose ChEBI	-
[Ref.: #19435]	rhamnose ChEBI	+/-
[Ref.: #19435]	sucrose ChEBI	+
[Ref.: #19435]	xylose ChEBI	+

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19435]	298	-	-	-	-	-	-	-	+	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on possible application of the strain and its possible interaction with e.g. potential hostsSafety information

[Ref.: #9446]	Biosafety level	1	Risk group (German classification)
[Ref.: #19435]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces ruber gene for 16S rRNA, partial sequence	AB018203	121	ENA	83378 tax ID	*
[Ref.: #20218]	Streptomyces ruber gene for 16S rRNA, partial sequence, strain: NBRC 14600	AB184604	1417	ENA	83378 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces ruber NRRL ISP-5378	GCA_000725575	scaffold	GenBank	83378 tax ID	*
[Ref.: #66792]	Streptomyces ruber NRRL B-1661	GCA_000719015	contig	GenBank	83378 tax ID	*
[Ref.: #66792]	Streptomyces ruber strain NRRL B-1661	83378.3	wgs	PATRIC	83378 tax ID	*
[Ref.: #66792]	Streptomyces ruber strain NRRL ISP-5378	83378.4	wgs	PATRIC	83378 tax ID	*

Availability in culture collectionsExternal links

[Ref.: #9446]

Culture collection no.

DSM 40304, ATCC 17754, CBS 228.65, IFO 14600, ISP 5304, JCM 3131, KCC A-0131, NBRC 14600, NCIB 10983

[Ref.: #20218]

Associated Passport(s) in StrainInfo

165240, 99373, 231092, 99375, 99376, 165242, 165243, 333447, 99378

References

#9446

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40304

#19435

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These References are textmined

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