Name: Gluconobacter albidus JCM 20271
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162840

Type strain:

Species: Gluconobacter albidus

Culture col. no.: JCM 20271, BCC 14434, CCM 2365, IAM 1806, IFO 3250, LMG 1355, LMG 1356, NBRC 3250

Strain history: IAM 1806 <-- T. Asai G-5 <-- IFO 3250 <-- K. Kondo 05.

NCBI tax ID(s): 1307944 (strain), 318683 (species)

SI-ID 2897

LMG 1355, CCM 2365, IAM 1806, IFO 3250, LMG 1356, NBRC 3250, BCC 14434, BCRC 11228, CCRC 11228, CIP 109098, JCM 20271

Section

Gluconobacter albidus JCM 20271 is a mesophilic bacterium that was isolated from Dahlia.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Gluconobacter*
	Species	**Gluconobacter albidus**
	Full Scientific Name (LPSN)	Gluconobacter albidus (ex Kondo and Ameyama 1958) Yukphan et al. 2005

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Dahlia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB178392 (>99% sequence identity) for Gluconobacter from Microbeatlas

Aquatic Samples	546
Soil Samples	721
Animal Samples	2856
Plant Samples	858
Total Samples	4981

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gluconobacter albidus gene for 16S rRNA, partial sequence, strain:NBRC 3250	AB178392	1409	ENA	318683 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Gluconobacter albidus NBRC 3250	GCA_002723915	contig	GenBank	318683 tax ID	*
[Ref.: #66792]	Gluconobacter albidus LMG 1356	GCA_001580845	contig	GenBank	318683 tax ID	*
[Ref.: #66792]	Gluconobacter albidus strain LMG 1356	318683.5	wgs	PATRIC	318683 tax ID	*
[Ref.: #66792]	Gluconobacter albidus strain NBRC 3250	318683.9		PATRIC	318683 tax ID	*
[Ref.: #66792]	Gluconobacter albidus LMG 1356	2724679592	draft	JGI IMG/M	318683 tax ID	*

[Ref.: #67770]

GC-content

60 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gluconobacter albidus strain LMG 1356 PATRIC: 318683.5
[Ref.: #69480]	gram-positive	no	96.493	no
[Ref.: #69480]	anaerobic	no	99.23	no
[Ref.: #69480]	halophile	no	87.489	no
[Ref.: #69480]	spore-forming	no	95.661	no
[Ref.: #69480]	glucose-util	yes	89.469	no
[Ref.: #69480]	motile	yes	72.567	no
[Ref.: #69480]	flagellated	no	80.071	no
[Ref.: #69480]	aerobic	yes	86.511	no
[Ref.: #69480]	thermophile	no	96.311	yes
[Ref.: #69480]	glucose-ferment	no	90.18	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 20271, BCC 14434, CCM 2365, IAM 1806, IFO 3250, LMG 1355, LMG 1356, NBRC 3250

[Ref.: #113644]

SI-ID 2897

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#113644

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID2897.1 )

* These data were automatically processed and therefore are not curated

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Gluconobacter albidus strain LMG 1356

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