Name: Sediminicola arcticus JCM 19894
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162657

Type strain:

Species: Sediminicola arcticus

Culture col. no.: JCM 19894, KCCM 43038

Strain history: C. Y. Hwang; KOPRI, South Korea; PAMC 27266.

NCBI tax ID(s): 1574308 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Sediminicola arcticus JCM 19894 is a psychrophilic bacterium that was isolated from Deep-sea sediment of the Arctic Ocean.

psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Sediminicola*
	Species	**Sediminicola arcticus**
	Full Scientific Name (LPSN)	Sediminicola arcticus Hwang et al. 2015

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	15 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Deep-sea sediment of the Arctic Ocean
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KM576847 (>99% sequence identity) for Sediminicola arcticus from Microbeatlas

Aquatic Samples	1096
Soil Samples	68
Animal Samples	49
Plant Samples	13
Total Samples	1226

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sediminicola arcticus strain PAMC 27266 16S ribosomal RNA gene, partial sequence	KM576847	1416	GenBank ENA	1574308 tax ID

[Ref.: #67770]

GC-content

37.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19894, KCCM 43038

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sediminicola arcticus sp. nov., a psychrophilic bacterium isolated from deep-sea sediment, and emended description of the genus Sediminicola.	Hwang CY, Lee I, Cho Y, Lee YM, Jung YJ, Baek K, Nam SI, Lee HK	Int J Syst Evol Microbiol	10.1099/ijs.0.000138	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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