Name: Cupriavidus yeoncheonensis JCM 19890
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162654

Type strain:

Species: Cupriavidus yeoncheonensis

Culture col. no.: JCM 19890, KCTC 42053, LMG 31506

Strain history: D.-C. Yang and Y.-J. Kim DCY86.

NCBI tax ID(s): 1462994 (species)

Section

Cupriavidus yeoncheonensis JCM 19890 is a mesophilic, Gram-negative bacterium that was isolated from Ginseng soil.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Cupriavidus*
	Species	**Cupriavidus yeoncheonensis**
	Full Scientific Name (LPSN)	Cupriavidus yeoncheonensis corrig. Singh et al. 2015

	Synonym	Cupravidus yeoncheonense
	Synonym	Cupriavidus yeoncheonense

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #69480]	Motility	yes Confidence in %91.297

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.986
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Ginseng soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yeoncheon Province
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Cupriavidus yeoncheonensis strain DCY86 16S ribosomal RNA gene, partial sequence	KF915797	1449	ENA	1462994 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cupriavidus yeoncheonensis LMG 31506	GCA_905397275	contig	GenBank	1462994 tax ID	*
[Ref.: #66792]	Cupriavidus yeoncheonensis strain LMG 31506	1462994.3	wgs	PATRIC	1462994 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Cupriavidus yeoncheonensis strain LMG 31506 PATRIC: 1462994.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cupriavidus yeoncheonensis strain LMG 31506 PATRIC: 1462994.3
[Ref.: #69480]	motile	yes	88.748	no
[Ref.: #69480]	gram-positive	no	98.243	no
[Ref.: #69480]	anaerobic	no	98.826	no
[Ref.: #69480]	aerobic	yes	92.214	no
[Ref.: #69480]	halophile	no	94.619	no
[Ref.: #69480]	spore-forming	no	93.996	no
[Ref.: #69480]	thermophile	no	98.931	yes
[Ref.: #69480]	glucose-util	no	70.216	no
[Ref.: #69480]	flagellated	yes	51.797	no
[Ref.: #69480]	glucose-ferment	no	90.031	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19890, KCTC 42053, LMG 31506

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cupriavidus yeoncheonense sp. nov., isolated from soil of ginseng.	Singh P, Kim YJ, Nguyen NL, Hoang VA, Sukweenadhi J, Farh Mel-A, Yang DC	Antonie Van Leeuwenhoek	10.1007/s10482-014-0369-z	2015	*
Phylogeny	Cupriavidus nantongensis sp. nov., a novel chlorpyrifos-degrading bacterium isolated from sludge.	Sun LN, Wang DS, Yang ED, Fang LC, Chen YF, Tang XY, Hua RM	Int J Syst Evol Microbiol	10.1099/ijsem.0.001034	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Cupriavidus yeoncheonensis strain LMG 31506

Cupriavidus yeoncheonensis strain LMG 31506

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