Name: Paenibacillus yonginensis JCM 19885
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162650

Type strain:

Species: Paenibacillus yonginensis

Culture col. no.: JCM 19885, KCTC 33428

Strain history: D.-C. Yang and Y.-J. Kim DCY84.

NCBI tax ID(s): 1462996 (species)

Section

Paenibacillus yonginensis JCM 19885 is a mesophilic bacterium that was isolated from Humus soil of Yongin forest.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus yonginensis**
	Full Scientific Name (LPSN)	Paenibacillus yonginensis Sukweenadhi et al. 2016

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Humus soil of Yongin forest
[Ref.: #67770]	Geographic location (country and/or sea, region)	Gyeonggi Province
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KF915796 (>99% sequence identity) for Paenibacillus yonginensis subclade from Microbeatlas

Aquatic Samples	6
Soil Samples	9
Animal Samples	17
Plant Samples	4
Total Samples	36

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus yonginensis strain DCY84 16S ribosomal RNA gene, partial sequence	KF915796	1474	ENA	1462996 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus yonginensis DCY84	GCA_001685395	complete	GenBank	1462996 tax ID
[Ref.: #66792]	Paenibacillus sp. DCY84	1462996.4	complete	PATRIC	1462996 tax ID	*

[Ref.: #67770]

GC-content

62.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus sp. DCY84 PATRIC: 1462996.4
[Ref.: #69480]	motile	yes	89.243	no
[Ref.: #69480]	gram-positive	yes	81.194	no
[Ref.: #69480]	anaerobic	no	97.8	no
[Ref.: #69480]	aerobic	yes	78.61	no
[Ref.: #69480]	halophile	no	91.703	no
[Ref.: #69480]	spore-forming	yes	95.937	no
[Ref.: #69480]	thermophile	no	97.281	yes
[Ref.: #69480]	glucose-util	yes	90.098	no
[Ref.: #69480]	flagellated	yes	73.141	no
[Ref.: #69480]	glucose-ferment	no	84.768	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19885, KCTC 33428

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus yonginensis sp. nov., a potential plant growth promoting bacterium isolated from humus soil of Yongin forest.	Sukweenadhi J, Kim YJ, Lee KJ, Koh SC, Hoang VA, Nguyen NL, Yang DC	Antonie Van Leeuwenhoek	10.1007/s10482-014-0263-8	2014	*
Phylogeny	Paenibacillus mobilis sp. nov., a Gram-stain-negative bacterium isolated from soil.	Yang D, Cha S, Choi J, Seo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.002643	2018	*
Genetics	Complete genome sequence of Paenibacillus yonginensis DCY84(T), a novel plant Symbiont that promotes growth via induced systemic resistance.	Kim YJ, Sukweenadhi J, Seok JW, Kang CH, Choi ES, Subramaniyam S, Yang DC	Stand Genomic Sci	10.1186/s40793-017-0277-8	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Paenibacillus sp. DCY84

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