Name: Filimonas endophytica JCM 19844
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162629

Type strain:

Species: Filimonas endophytica

Culture col. no.: JCM 19844, BCRC 81168, KCTC 42060

Strain history: S. B. Kim SR 2-06.

NCBI tax ID(s): 1500311 (species)

Special Collections

JCM
KCTC

Section

Filimonas endophytica JCM 19844 is a bacterium that was isolated from Surface-sterilized root of Cosmos bipinnatus.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Filimonas*
	Species	**Filimonas endophytica**
	Full Scientific Name (LPSN)	Filimonas endophytica Han et al. 2015

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Surface-sterilized root of Cosmos bipinnatus
[Ref.: #67770]	Host species	Cosmos bipinnatus
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KJ572396 (>99% sequence identity) for Filimonas from Microbeatlas

Aquatic Samples	457
Soil Samples	823
Animal Samples	336
Plant Samples	262
Total Samples	1878

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Filimonas endophytica strain SR 2-06 16S ribosomal RNA gene, partial sequence	KJ572396	1450	GenBank ENA	1500311 tax ID

[Ref.: #67770]

GC-content

46 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19844, BCRC 81168, KCTC 42060

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Filimonas zeae sp. nov., an endophytic bacterium isolated from maize root.	Gao JL, Sun P, Wang XM, Qiu TL, Lv FY, Yang MM, Lu M, Sun JG	Int J Syst Evol Microbiol	10.1099/ijsem.0.001116	2016	*
Phylogeny	Filimonas endophytica sp. nov., isolated from surface-sterilized root of Cosmos bipinnatus.	Han JH, Kim TS, Joung Y, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.000661	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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