Name: Aequorivita sinensis JCM 19789
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162611

Type strain:

Species: Aequorivita sinensis

Culture col. no.: JCM 19789, CGMCC 1.12579

Strain history: D.-C. Zhang S1-10.

NCBI tax ID(s): 1382458 (species)

Section

Aequorivita sinensis JCM 19789 is a mesophilic bacterium that was isolated from Marine sediment in the East China Sea.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Aequorivita*
	Species	**Aequorivita sinensis**
	Full Scientific Name (LPSN)	Aequorivita sinensis Wang et al. 2020

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Marine sediment in the East China Sea
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KF312889 (>99% sequence identity) for Aequorivita sinensis subclade from Microbeatlas

Aquatic Samples	644
Soil Samples	343
Animal Samples	1594
Plant Samples	85
Total Samples	2666

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aequorivita sinensis 16S ribosomal RNA gene, partial sequence	KF312889	1516	ENA	1382458 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aequorivita sinensis S1-10	GCA_006346335	contig	GenBank	1382458 tax ID

[Ref.: #67770]

GC-content

34.6 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aequorivita sinensis S1-10 NCBI: GCA_006346335.1
[Ref.: #69480]	motile	no	87.123	no
[Ref.: #69480]	flagellated	no	95.172	no
[Ref.: #69480]	gram-positive	no	98.284	no
[Ref.: #69480]	anaerobic	no	99.066	no
[Ref.: #69480]	aerobic	yes	90.126	no
[Ref.: #69480]	halophile	yes	69.358	no
[Ref.: #69480]	spore-forming	no	95.282	no
[Ref.: #69480]	thermophile	no	99.319	yes
[Ref.: #69480]	glucose-util	yes	78.556	no
[Ref.: #69480]	glucose-ferment	no	90.419	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19789, CGMCC 1.12579

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aequorivita sinensis sp. nov., isolated from sediment of the East China Sea, and reclassification of Vitellibacter todarodis as Aequorivita todarodis comb. nov. and Vitellibacter aquimaris as Aequorivita aquimaris comb. nov.	Wang Q, Cai SD, Liu J, Zhang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.004174	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Aequorivita sinensis S1-10

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